HsaINT0187618 @ hg19
Intron Retention
Gene
ENSG00000204519 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:25108]
Coordinates
chr19:58193357-58196753:+
Coord C1 exon
chr19:58193357-58193612
Coord A exon
chr19:58193613-58196629
Coord C2 exon
chr19:58196630-58196753
Length
3017 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACTATTCCTGCTGTGACAGGGT
3' ss Score
4.66
Exon sequences
Seq C1 exon
GTCCTCCTCGTGGCGGTCATTTTGGCCTCTGTCCTGTTTGTCCAGCCCGCCAGTTTCTGCAGTGGAGGTCGCGACTGAGGGACGGGACAGAGAAGTCGCGAAAGTGGGCCAGAGGTTCTGCGACACCACCTCGGGTGAGCTGCGCCAGGCCCGGGATAGGGACTGTTGTGTTCGAATGCCCGCCCCGGTCGGCCGCCGCTCCCCGCCTAGTCCACGGAGCTCAATGGCGGCAGTCGCGCTGAGGGACTCGGCTCAG
Seq A exon
GTGAGTTGTGCGTCCTCCGGGTCTCGCCTACCTCCCCCAGCAGAAGCCTTAAGGCCCAGTGAGGGATGCCTGCTCACAGCCCTGCAGCCCAGGCCCCAGTACCCTGGACAAGAAGGCGCTTGTGGATTGGACCCGTTTGTGACGCCCAGTGTGTACGGAAATGTGACGGGCAGTTGACTGGCGCGTGCAGAACTTGGAGCTGCGACTAAGCTGGGGGGGATTCAGGAGCCTGGGGTCCGTCTCGGGTCTGCAGGAACATAGAGTGAGGCAGAGTTGCACCTGACGAATTTGACGATTCTGAGGACACTGGCAGCCTTCGAGATTTGTGAACAGATAGGGACACTGGGCTAGGATTTCCTAAAGCTATCCAAAAGTTGCTCAGGGGAAGAACAGGCTGAAGAGAGGTAATAGTAGTTAGGCATAGGAAGACTGAGTTCTTGTCCAAGCTCACGCAGCTGGTAAAGTCAGCACTGAGAACTGAGGTGCGGAGATAGTGCAGCCAGCCCAGGCCACCTGGCTCCAAAACTGGACCAGGGTCATTGGGCGACCTGAGCCTCGCCACTCGTCTAGCCTTGGGCCCTGAGACTTTGAGCAAATACAAAGCCCAGAGTCTTAAGTCCAGGTTAGATTATATGAAGCTGTTGGCAGCCGGGGGAAAGGAGATGTAGAAGGTTGTCCAAGGCAAAGTTACCAGTATATGCTAAGTTTGGAGAGGAGGCTAAGATAGTTCAGGAACCTACAATTATTTTCTTTTCATGAGAACAGGGAGCAGTGTAGTAGAAGTCAGACCCGGAATGGTTCCCTGAGAAGTTGAGTTGTCTATTCGTTACTTAATAGTAACAGTGGGAGGTTTGGAGTGGAAGAGGGAGGTGATCTGGTTCTGGTCTTATTAGGCTCCCTGTGGCTGCAGCATGGGAAGCCAACTGAAGGATGAGGTGGGGAGACCTGGGAGGAGACTACTGGGATAGGCCAGGTGAATGTGATAGAATGTGATAGGCCAAAATGGTGGCTGTGAAGATGCGAGAAGCAGTTGGATTCTGGATTCATTTTTTAAGTAGGGCTGCCTGAATTTTTAGTTTTGAGAAAGAGAGTGGAGTCAGGGATGACTGAAAGGTTTTATTTTGGCAGTTAGAAGTGTGGAAGCTCCATCAACTAAGATGGGGAAGTACATAGTAGGAGTAGTTTTCATTTGGGATATCAGAAGTTTTATTTTTGACCTGCTAAGAGTATGAGAGCTTTCAGAGAATGGTTCATGGGCTGCTGGAACTGTAGGTCAGGAACAGTGAGGAGAGATTCAGAATGGAGACTTTTCCAAAAGGTAGTGGACAATCTGTGGGCCGGGGTGGAGCTGTGGATCACATTTAGTAGAGGGGAAGCCTGCTCACAATGATAATAATAGTTGTCAAGGAAGGGGAGGGGAAGGTCAAGGACAGGTCTCCTGTGTGAGCCCCTGGTTGTGTGAGGTGTTGCAACACAGGTCTTGGACAGAAGTGTTCACGGTGAGGGTCGTACAGAGATTATGATCTAGCATGTGGCCAAGGCTTCTCAGGGGTGAGTAGACATGAGATGAATGTAGAGGCATAGGAGTTAGACAGGATGATGCTAGGACTGGTGCGTATTCACCTCTCTGCAGACTGACCAGGGTTTTATATTAACTCTTGGTGGGATCTGGGAAGTTTCAGTCAGGCTGTCACGTTATCTTAGGGGCATAATTGGCCATCTGTGGGACTCGATGGGCCCGGGGTAGAGAGCCACTGGGGTTGGACCTTGAATTAGTGGTAGTTGGAGAGAGGAAGGCTGTGACTGGTTGGGGGACAGCAATCACAGCCCAGAAGTGGAAGAGGCCTTGGTTATCTGAGATCCACAGGTGATTCTTGATGGGTGAGGTTGAAGCAAGGAATAGTCAGGTAGAAAGGCCTTCATGGTATGACTTGAGGCTGCCCCTAACTTTAGGTGCAGTTAGAGATCTGGGATAGTACTGAACCGTATTTGAATTTGCCAGCCACTCTCTGGGCCCCATATGCTGAGTAACCAGTTGGGAGGCCAAGGAGATGCTCATGGTATGAGGCAGGAAGTAAGCTGTGGCTGTGGGAGTGACACTGTGAGAGAAGTGTGGTAGAGTATTGTGCACATGGAGACAAGAATGTGAAGTGGTGGCTCCTTGGTGTTGAGGACACAAGGGTGAAGTATGAACCAAGACCCTTGGTTGTGTTTGGGAGCCATGGTCTGTTGTCTTCCAGGAGAGTTTCCTTACAAGAGAGTATGGTTCCTTGCATGGCAGGCTCAGAGCTTAGATACTTGCCCACCTGCCTGTTGTTGCTGTGGGAGAACACAATGACCAATGGGACCATAAGGAGAGAGGGGGCATTAGTGTCACCAGGCCCTGTTGCATTCTTTCAAATGAGAAGATGGAGAGGAGGATGAACAGGGGATAGATGCAGCAGGGATGAATTTGGGGTCCTAGGAGAGATACTCATAATGGAATGAACTGTCCCAATCATGGAAAAGCTGTGTGACCTTTGAGGTTGTGGCTGTGGGAATGCAGCTGTGTGAGACAGGTGTGGTTCAAAGAGTGATGTACATGAGAAGAGAGAGAATAAACTGAGGGCCATATGGGTGAACGGGAGTCAGAGGGGTAAAGGGTAAGCCCGTGTTAGTTGTGTCTTGGAAGATCAATCTTGGGGACTTCACGGGTATTGCCTGACAAGACAAACGTCAGATCACTCACACCCTGTCTATGGCCAGTTCTCTCTCTAGCTGGTGTTTGTGAGTAACGAGAGGTATAGCCTACCTGCCATGCCCAGAGCTTAGATAGCATCTATCTGTTCATAGGCCTGTTGTTGCTATTCGAGGACTCAGTATCAGTGGAACTGTGGGGAGAGGGTAGGCATCGGTGGCACTGTGGCTGGTTATCTCCGCTGAGGTGGGCAATAGGGTGACCTGGGGATGGATGTTGGGGGCAAGAGGATAATGAACTCCGGGTCTGATCGTGGATTGAACTATTCCTGCTGTGACAG
Seq C2 exon
GGTATGACCTTTGAGGATGTGGCCATTTATTTCTCCCAAGAAGAGTGGGAGCTCCTTGATGAGTCTCAGAGGTTCCTGTACTGCGATGTGATGCTGGAGAACTTTGCACATGTAACATCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204519-ZNF551:NM_138347:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)