HsaINT0188157 @ hg19
Intron Retention
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:13139]
Coordinates
chr8:146052903-146054475:+
Coord C1 exon
chr8:146052903-146052994
Coord A exon
chr8:146052995-146054427
Coord C2 exon
chr8:146054428-146054475
Length
1433 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTTTCATAATTGCCAACAGGTC
3' ss Score
8.36
Exon sequences
Seq C1 exon
CGGAAGTTTGCGGGGCGGGGCGGACGCGGGTGGCCAAGGCCCGTTTCCGGCGGCGTCGCGCGTTTGCGAGCCTCGGGTGGTCCTCAGGGAGG
Seq A exon
GTGAGTCGGCGCGGCGGGCGCGGACTCGGGTTGCCCTCGGTCCGAGTGATCCCTGGTCGCTTCCTTAGCCCTCCCGCCTTCGGCATTGGGGTCCCCGCGTCCCCCGGGCCTCCAGGCGGGAAAGCGCGGGGGCTTTGCGGGGCCTTGAGCGCCTGGTGTGGGAGGTGGTCGAGCCCAGCCACCCTCCCCCGCGGCGGCGCGAGGTGGGCTTCGTTTGGCCGAGTCTCGCAGCTCCCCGCAGACCCCGCTCGTGGCGGCCACGGTGTCCGGGGCCTGAGTAAGGCGAGCTCCAGCTGCGGCCTTTTCTTCAGGCCTGGGTCTACTCCCGGGGCCCTGACTCCTCCTGCGAAATCACCTCCTTCTAGAGCCTTTTCTCTTTCTATTTATTGCCCCGGAAGGCCTAGGATAAGTGACAGTGGAGGAAGGAACGGTGCCTTGGGTGGGGTAGGCTGTTTGTCTTCTCTAAATTCTGGTTGCTATTCCGGGCATTCCTACTGTCAGGAGCCAGGTGGGGGGATCAGCCTACCTGTGCCGGTGACCTGGGGCTTCCACCCACAAACCACTTTCTGGGCCAGAAGCTGCCATACGAAGACTCTTTTTCCCATTCCGACCTCCCGGGGGAATGCCTGGGCAGGTAGAGGGTCTGGGGTCATTGGCTTAATTGAGGTGAACGATTTATATCAGATTACATCCCTGTGCCTGGTTCCATCCTGGCGACAGGTGAGCTGGAGACTGGAATTTATGTACTTGAGGGCAGGGGTTTCCATGTCCACTCTTGTCTTCCCTACAGTTTGTCATTTTTGCTCCTGCCTTCTCCAACCTCCAGTCGCTCACTGCCTTCCCCAACCTCCAGTCGCTCACTGCCTTCCCTTGCTGCCGGGAATTTACCCACACTGGTTCATCCAACCCCATTTCTTCTTGCTTCAGGCCCTTTCACATGCTATTCCTGCTGCCTGGAGTGCTCTCTCCACCTCCATTACCTTGGCCGAGGTCCCTGGGGAAGTGACCCATTACACTGAACGTTCTAGTCTAAGTGGCTTTCATAGTTCCCTGTACTTGAGCGCTGTCGTGGTTGCAGTGTGCTTATTTGTGTGGTTATTTAACTCTTTCCTCCGCCAGACTGCTTCGTGAAGGCAGGGTCCTCGTGTCCACTACTGTATCCCCATTACTCAGTGCCTGGCACGTGGCATCCACTTCTTACGGCTTTGTGGAGTGAGTCACACATGCCACACACACATACACTCTAAAGAGGAACAAGAGTTCAGTGGGCCTCCTTCACTCAAGTGCCATGGCTGCTTCAGCCCAGCCCCATGTCCCTGCTAGAGAAATCTGGGGCTGGAGGTAAAGGAGCAGAGAGCACAGTACCCCCTTGATTAGCCTGGAAGTTGGGCTTCTGGCACCTTGACCTCTAATCCTTTCATAATTGCCAACAG
Seq C2 exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789-ZNF7:NM_003416:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)