MmuINT0179736 @ mm9
Intron Retention
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76709706-76711212:+
Coord C1 exon
chr15:76709706-76709783
Coord A exon
chr15:76709784-76711168
Coord C2 exon
chr15:76711169-76711212
Length
1385 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCGTTATGATTTCTCACAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GGGTGGGGCACAGTGGGATAAGCTTGCAAAGCCCTTTCCGGTGGCTCTCTTGTTGGGATCCACCACGCGCCGGGGCAG
Seq A exon
GTGAGTAGGCGCAGTCGCTTTCCTTGTTTTTAGGGCAAGGGACACTTGGCTTTTACTCCCCAAAAGGATGGAAGGCGTGGGCGGCTCGGTGCTGTTGTGAATGCCTGGCCGAAGACGTGATCCCAGCGGAGTAGAATAGCCGAGCATCCCAGCTCTTCTAGCCTGCTCCCGGGCTCCAGTGTTGAACCTGAGCAAGGCTGCTTCCCTCCAGGCCTGGGGCTGGGTGCAACCTCCCTCATTCCTCGTGAGTAATCACTTTCTGGGACTATCTCTTCTCTCATTTCTGCACCTGAATGACCTGGAGTCGGTCACGCCTGCGGACTCAGAAGGCATCTCAGGATTTGCTCTTCTGTATCTGAGACCGCGATTTCCCATTGGTAGTCCAAATGCTGGGGTCTGAGAGGAGAATTCTTTTCTAGTGTTCACTGCTAATTGGCCAGTCTAGCCAGTGGCCAGATACCTGGGCCAAAAGCTACCTGGGAAAGTAGCTTCCTCTCTCCCATTTTGACCTGAAGGTGGGTGTTTGTGTGTGCAAGGAGGGGCCCAAGGGCTTTGGTTTAGCAGAAGGGGACTTCTCGAATCCTTTTTTGTCGTCATCCTTGTGACTTAGGGCAGCTGTAGCTCGTTCTGGAATTTAGGTACAGGTGAACAGGGATTGTTTTCCTTCTGAAGGCCTTTTTTTCTTTTTCCTGGACCTGACTGCTACTGCCTCCAGTTAACTCTTCCTTATCTTCTCTCCTTTGGCTCACACACTGGCTCACTTGGTCCCATTTTCAGATCCTGAAGTGCGTTTCCTACCTCAGCCACCAGCTTGGCCTAGGTCCCTGGGGGAAGGCATCCTTTAAACTTTACCAGCGTTTCTCATTTAAACACTTTACTAGTCCCCCCGTACTTCAGCACTGTTGTTGATGTGATCTTAGTTGTCCTTTCTACTAGATGTCCCATGAAGTCTCCCTCGTTGTTCAGTTGAATGTGTGGCCTATGGCAGCCATTTATTTATTTATTCATTCATTCATTCATTTATTTTTTGGTTTATCGAGACAGGATTTCTCTGAGTAGCATTAACTGTCCTGGAACTCATTCTGTAGATTAGGCTGGCTTCGAACTCAGAGACTAAAGGTGTGTTTTATACACACACACACACAACACACACACACACACACCTGCCGCAGCTGTACATCATGGCTCCAGCCCTTACTCCCACACAACACAGACAAGAAGGCTCAGGAGCTGATATTCAAATATCAGCCTTTGCCCAGTCTGGTGTGTCTGTGCGTCTGGCTTGGGTGGTAAAGAAGCAGTGGGGTACAGAGCCCCTCCAGTCACCCTGGGAACTGGGGAGCTTCCTCCCCTCTGACCTCTGATCTCGTTATGATTTCTCACAG
Seq C2 exon
GTGTCTGACTCAGGACAAGCGGATCCCACCCTCCAGATCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669-Zfp7:NM_145916:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: