HsaINT0188157 @ hg38
Intron Retention
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144827618-144829090:+
Coord C1 exon
chr8:144827618-144827812
Coord A exon
chr8:144827813-144829042
Coord C2 exon
chr8:144829043-144829090
Length
1230 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CCTTTCATAATTGCCAACAGGTC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCGCGGCGGGCGCGGACTCGGGTTGCCCTCGGTCCGAGTGATCCCTGGTCGCTTCCTTAGCCCTCCCGCCTTCGGCATTGGGGTCCCCGCGTCCCCCGGGCCTCCAGGCGGGAAAGCGCGGGGGCTTTGCGGGGCCTTGAGCGCCTGGTGTGGGAGGTGGTCGAGCCCAGCCACCCTCCCCCGCGGCGGCGCGAG
Seq A exon
GTGGGCTTCGTTTGGCCGAGTCTCGCAGCTCCCCGCAGACCCCGCTCGTGGCGGCCACGGTGTCCGGGGCCTGAGTAAGGCGAGCTCCAGCTGCGGCCTTTTCTTCAGGCCTGGGTCTACTCCCGGGGCCCTGACTCCTCCTGCGAAATCACCTCCTTCTAGAGCCTTTTCTCTTTCTATTTATTGCCCCGGAAGGCCTAGGATAAGTGACAGTGGAGGAAGGAACGGTGCCTTGGGTGGGGTAGGCTGTTTGTCTTCTCTAAATTCTGGTTGCTATTCCGGGCATTCCTACTGTCAGGAGCCAGGTGGGGGGATCAGCCTACCTGTGCCGGTGACCTGGGGCTTCCACCCACAAACCACTTTCTGGGCCAGAAGCTGCCATACGAAGACTCTTTTTCCCATTCCGACCTCCCGGGGGAATGCCTGGGCAGGTAGAGGGTCTGGGGTCATTGGCTTAATTGAGGTGAACGATTTATATCAGATTACATCCCTGTGCCTGGTTCCATCCTGGCGACAGGTGAGCTGGAGACTGGAATTTATGTACTTGAGGGCAGGGGTTTCCATGTCCACTCTTGTCTTCCCTACAGTTTGTCATTTTTGCTCCTGCCTTCTCCAACCTCCAGTCGCTCACTGCCTTCCCCAACCTCCAGTCGCTCACTGCCTTCCCTTGCTGCCGGGAATTTACCCACACTGGTTCATCCAACCCCATTTCTTCTTGCTTCAGGCCCTTTCACATGCTATTCCTGCTGCCTGGAGTGCTCTCTCCACCTCCATTACCTTGGCCGAGGTCCCTGGGGAAGTGACCCATTACACTGAACGTTCTAGTCTAAGTGGCTTTCATAGTTCCCTGTACTTGAGCGCTGTCGTGGTTGCAGTGTGCTTATTTGTGTGGTTATTTAACTCTTTCCTCCGCCAGACTGCTTCGTGAAGGCAGGGTCCTCGTGTCCACTACTGTATCCCCATTACTCAGTGCCTGGCACGTGGCATCCACTTCTTACGGCTTTGTGGAGTGAGTCACACATGCCACACACACATACACTCTAAAGAGGAACAAGAGTTCAGTGGGCCTCCTTCACTCAAGTGCCATGGCTGCTTCAGCCCAGCCCCATGTCCCTGCTAGAGAAATCTGGGGCTGGAGGTAAAGGAGCAGAGAGCACAGTACCCCCTTGATTAGCCTGGAAGTTGGGCTTCTGGCACCTTGACCTCTAATCCTTTCATAATTGCCAACAG
Seq C2 exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789:ENST00000528372:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCGGGTTGCCCTCG
R:
CATGAGGCTCAGTGGTGGGT
Band lengths:
230-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains