MmuINT0179736 @ mm10
Intron Retention
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76879259-76880782:+
Coord C1 exon
chr15:76879259-76879353
Coord A exon
chr15:76879354-76880738
Coord C2 exon
chr15:76880739-76880782
Length
1385 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCGTTATGATTTCTCACAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GCGAGCGGAAGTCGCCCGGGTGGGGCACAGTGGGATAAGCTTGCAAAGCCCTTTCCGGTGGCTCTCTTGTTGGGATCCACCACGCGCCGGGGCAG
Seq A exon
GTGAGTAGGCGCAGTCGCTTTCCTTGTTTTTAGGGCAAGGGACACTTGGCTTTTACTCCCCAAAAGGATGGAAGGCGTGGGCGGCTCGGTGCTGTTGTGAATGCCTGGCCGAAGACGTGATCCCAGCGGAGTAGAATAGCCGAGCATCCCAGCTCTTCTAGCCTGCTCCCGGGCTCCAGTGTTGAACCTGAGCAAGGCTGCTTCCCTCCAGGCCTGGGGCTGGGTGCAACCTCCCTCATTCCTCGTGAGTAATCACTTTCTGGGACTATCTCTTCTCTCATTTCTGCACCTGAATGACCTGGAGTCGGTCACGCCTGCGGACTCAGAAGGCATCTCAGGATTTGCTCTTCTGTATCTGAGACCGCGATTTCCCATTGGTAGTCCAAATGCTGGGGTCTGAGAGGAGAATTCTTTTCTAGTGTTCACTGCTAATTGGCCAGTCTAGCCAGTGGCCAGATACCTGGGCCAAAAGCTACCTGGGAAAGTAGCTTCCTCTCTCCCATTTTGACCTGAAGGTGGGTGTTTGTGTGTGCAAGGAGGGGCCCAAGGGCTTTGGTTTAGCAGAAGGGGACTTCTCGAATCCTTTTTTGTCGTCATCCTTGTGACTTAGGGCAGCTGTAGCTCGTTCTGGAATTTAGGTACAGGTGAACAGGGATTGTTTTCCTTCTGAAGGCCTTTTTTTCTTTTTCCTGGACCTGACTGCTACTGCCTCCAGTTAACTCTTCCTTATCTTCTCTCCTTTGGCTCACACACTGGCTCACTTGGTCCCATTTTCAGATCCTGAAGTGCGTTTCCTACCTCAGCCACCAGCTTGGCCTAGGTCCCTGGGGGAAGGCATCCTTTAAACTTTACCAGCGTTTCTCATTTAAACACTTTACTAGTCCCCCCGTACTTCAGCACTGTTGTTGATGTGATCTTAGTTGTCCTTTCTACTAGATGTCCCATGAAGTCTCCCTCGTTGTTCAGTTGAATGTGTGGCCTATGGCAGCCATTTATTTATTTATTCATTCATTCATTCATTTATTTTTTGGTTTATCGAGACAGGATTTCTCTGAGTAGCATTAACTGTCCTGGAACTCATTCTGTAGATTAGGCTGGCTTCGAACTCAGAGACTAAAGGTGTGTTTTATACACACACACACACAACACACACACACACACACCTGCCGCAGCTGTACATCATGGCTCCAGCCCTTACTCCCACACAACACAGACAAGAAGGCTCAGGAGCTGATATTCAAATATCAGCCTTTGCCCAGTCTGGTGTGTCTGTGCGTCTGGCTTGGGTGGTAAAGAAGCAGTGGGGTACAGAGCCCCTCCAGTCACCCTGGGAACTGGGGAGCTTCCTCCCCTCTGACCTCTGATCTCGTTATGATTTCTCACAG
Seq C2 exon
GTGTCTGACTCAGGACAAGCGGATCCCACCCTCCAGATCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669:ENSMUST00000023179:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types