HsaINT0188811 @ hg19
Intron Retention
Gene
ENSG00000176371 | ZSCAN2
Description
zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:20994]
Coordinates
chr15:85147051-85150116:+
Coord C1 exon
chr15:85147051-85147564
Coord A exon
chr15:85147565-85149759
Coord C2 exon
chr15:85149760-85150116
Length
2195 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
CCTGTCTCCCTATTTTACAGCTG
3' ss Score
11.12
Exon sequences
Seq C1 exon
CGGGACTACTTGTTGATATTTGAGGAGGGAAGTGTCTTACCTGAGAGCCTGGCTGGAGAAGACTGAGGTCCAAGGCTTGAAGCCTAAGTGATTGCCCCAGGACTGTGGATGATGGCTGCAGACATCCCGAGAGTGACCACTCCGCTGAGCTCCTTGGTCCAGGTGCCTCAAGAGGAAGATAGACAGGAGGAGGAGGTCACCACCATGATCCTGGAGGATGACTCCTGGGTGCAAGAAGCTGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGCAAGGGCGGCCCCCAGGAGGAGGTGACCAGGGGACCACAGGGTGCACTCGGCCGCCTCCGAGAGCTCTGCCGGCGCTGGCTGAGACCAGAGGTACACACCAAGGAGCAGATGTTAACCATGCTGCCAAAGGAAATTCAGGCTTGGCTGCAAGAGCATCGGCCTGAAAGCAGTGAGGAGGCAGCGGCCCTGGTGGAAGACTTGACCCAGACCCTTCAGGACAGTG
Seq A exon
GTGAGACGCAGAACCTCATAGGGAGAGGGCGGGAGCACCCTTCCAAGGTAGAGGAGTGTGGTGTTTCGGAGGAGGAGAAGGTGGTGTCCAAGGCAGAGTGGGGGGCTAGCGCCATCCCTCTGCTCTGTCTGCAGGCAGTCAGCGTGTTCATCAGCCTTTTAGTGTCCTCACTGTGTGCAAAGTCAGCTCCAGAAGTGCTAGGAGGGCCTTAGAGCTACATTTGAATTGTAAGCACAGTTTTTACTTCTGTGTTTATTTGGAGTGGTTGGGAAGGTGATGGAAGTTAAACGGGAGGAGATGGAGACCCCTGGCACCTTCACGTGGTTGTGCAAGAAACATCCAAATGGTTCTTGCAATTAGAGAAAACAATCTGATATTTTCAACATGACTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTGAAACGGAGTCTCGCTCTGTCACCCAGGCTGGGGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGTCTTCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTTTTGAGTAGCTGGAATTACAGGCGTGCGCCACCACGCCCGGCTAATTTTTTTATTTTTCGTAGAGATGGGGCTTCACCATGTTCGCCAGACTGGTCTCAAGCTCCTAACCTCGTGATCCGCCCACCTCAGCCCCCGAAAGTGCTGGGATTACAGGCGTGAGTCACCACGCCTGGCCCCAAAGTGGTTATTTTTATGAAACCAAGAGAAATGACAAGTAAACCAGCTAATAACTAGGGACTTTCTGTGGTATAAAGTAATCCTGGGCTCTTAAAATCGTAATTTCAAACTTGAGCTCTTTGCAATAGTTACTCTATTTTTTTCCGGTGTTACTAATAAGTATTGGGATTCTGGCTTGCCGTTTAACCGCTGTCTCCCTCCTGGTTTTCCATTGTAAAGTAGACTCACTTGATGACCAAATGTTTACTTCAGATGTGCCTTGAGGGCTGTCTCAGGGCTCGAAGGATATGGCTGCCTTTGTGCTGATGAAAACTACGGAAGTTCAGAGAAGGGAGCGTGGAGAGGAAAGGTCAGGTCAGAGAAGGCTTCCTGGAGGAGGTGACACCTAAGCAGGAGGTTGTAGAAGGGAGTAGGGTGTGGCAGCTGAGAGGAGCTGTGCTGAGCAGAGGCTTGGAAGGGCAGAGCCACGGTGGTTTATACCTTTGGGTGACAGGAGAGCTGGCAGATTGGAGTGGCAAGTGTGTTTTTAGGAAGTGGTAGGAAGTAGAGTTTGGGGGAAGGGTGGGTGAGGGCTTGGACTGAATGTTTTGCCTCAGTGGGTTCTTGAACTAGACCCCCAAGGGGCATGGAAGGAAGCGGAGTTTGGCAACAGGATGTAGGTTTGATTAGGGTAGTGAGAGGCTAGGGGCAGGAGAGCAGCCAGGAAGCTCCCTTGTCTTCAGGTGTGCAGTGATGGGGGTCTGCCCCAGATGGGGCACGTGTGAGAAAGAACTGATAGTCACCATGGCTAGCACTTTCCAAGCTCTTTCTGCAAGCCAGGAAATATGCTTAGCATCTAATATGGAAAACTCATGTAATCTTCACCACCCTGGAAGATAAGCAGGATTATCATCACCAGAGATCCCTTAAGATCATGTGCCTTTGTACCAGGCAGAACCAAGATTTGAACTTATGTGTGTGAGGACATAGCCCATGTTTTTAAGCGTTGTCATATGTATGATTCTAAGAGACACTTCCTAGTGGGTGTTGGAAGTTGGGGATGCAGATGGAATTAAGACAGTGACTACAGAGCATCTGGCCTGGAGGATTCAGAGGACTGGGAAGAGAAGAGAAGGAAACTGAAGGGGATTTGGGGCAGAGACTATCACAAACTCCAGGGACTGGGTGAATGAGTAGAGCTGTCCTCTGGAGAAAGGGACTGACGCCGAAGGTCTGCAGTGACCCAGCCCTGCCCTGGGCACCTTCATGCTTGTCTCACTAAGAATCCTGTGAGTGGCTGGCATTGTCATTTCACAGATAGGAAATATAAGTGCAGGAAACTCACATGGCTGTTGAGTGGTGGAGCCAGGATTCAAACCCAGACCTGTCTCTTTCTGCATGGAGATCTCAGTTTTGCTTGAAGCAAAGTGCTTGATTTTCTTTGGCCCTGAAAAAATAACTGCATTTTATTCCTTCTATTAAAATAAGCAAACCTGTCTCCCTATTTTACAG
Seq C2 exon
CTGTAGCTGTCGTTGCTTCCCTTCCGGTGGAGGTGACCAGTTTGTAATGAACTTCTGGATCTCCAGTCAGATACTATGGAGGAGAGAGTGATGGAGGGCTGAGGAGAGGCCTCAGGTTGTTATTTGGTTGGGGAGGCACAGAGCAGAGGTTCAGGTCTCAGCAGGTGTCAGAGGTGATTACAGCCCTTCCCATCCACCTTGCAGCAGGGGCTTTGTGCCTTTCATCTTTAACTGGGCACCTGAGATGGGAACCAATGGGGACCATCCCAGACACATGGGTTTGTCTGTCCCTGACTTCTGCCTCTGAGATTGTCTTTGTTGGTCTTTGTTTAATAAACGCCCCGACCTTCCTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176371-ZSCAN2:NM_017894:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(95.5=62.5)
A:
NA
C2:
PF0202312=SCAN=PD(3.4=18.8)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)