HsaINT1000055 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69174281-69174777:-
Coord C1 exon
chr17:69174607-69174777
Coord A exon
chr17:69174395-69174606
Coord C2 exon
chr17:69174281-69174394
Length
212 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTGATCCTCATTATTTGCAGGTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AAAAATGTTCAATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTATACTTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTG
Seq A exon
GTAAGTGATCATTTTTTCCACAAGCCAATTATAATAGTAGAATCAAAATGAAAATTCATTTTCATGAATGTTTTGTCATTAGCAAAAGGCATGTAATATGCAAGAAAATAAGAAAATTGCCTTAGGCAGCTTTATGACCTGATTATCTCCCCTCCTCTTTCCCTCTATGACCTGCCATTTCTAATCTTGCCATTGATCCTCATTATTTGCAG
Seq C2 exon
GTGGTATGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTTGGTCTTTTGGCTTTTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGGATTTCAGGCCTCTGG
R:
AAGCCAAAAGACCAAAAGCCA
Band lengths:
262-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains