GgaINT1002764 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8213946-8214393:-
Coord C1 exon
chr18:8214223-8214393
Coord A exon
chr18:8214060-8214222
Coord C2 exon
chr18:8213946-8214059
Length
163 bp
Sequences
Splice sites
5' ss Seq
TTGGTGCGA
5' ss Score
2.65
3' ss Seq
TGTCATCCTTCTCTCTTTAGATC
3' ss Score
12.66
Exon sequences
Seq C1 exon
ATAAAGGCTCATGCCCAGCTACGGGTCTCGGGGCTCTTCCCCTCAGCATACTGGTGTGGGCAGGCACTGGTGGACGTCCCACTCTTCTGGGCCCTGATGTGCCTCATGTTCGTGGTCGTGCTGCTCTTCAACCGCATCTGCCCCATGCAGGCCTTCATCATCCTGCCCTTG
Seq A exon
GTGCGAAAATCCCCCTCCCTCATCCCACAGTGTGTGACCACCACCAGCGCGGTGGTGCTGGCTGATCCTGATGCATTCAGTAATCTAATCAAACAAACCTCTGTAAGCAGGATTTGGTGTATTCACATTGGTTTCCTTGTCGGTGTCATCCTTCTCTCTTTAG
Seq C2 exon
ATCTTTAGTGCCATTGGTTACGGATTTTCTCTCATCTTCCTCGTCTATTTGATTGCCTTTATATTTCGCAAGGGTCGAACCAATCGTTACCTGTGTTCTTTTGTCTTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCCAGCTACGGGTCTC
R:
TTGGTTCGACCCTTGCGAAAT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]