HsaINT1003656 @ hg38
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60082150-60082737:-
Coord C1 exon
chr10:60082615-60082737
Coord A exon
chr10:60082177-60082614
Coord C2 exon
chr10:60082150-60082176
Length
438 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ATGCATCTTGGAACCAAAAGGAG
3' ss Score
-0.98
Exon sequences
Seq C1 exon
ATTAGAGACACCAGCCAAGAGCCCTGTGGTCGTCTGTCTTTTCTGAAAGAACCAAAGACAACAAAAGGACTGCCTCAAACAGCGGTTTGCAACTTAAATATCACTCTGCCAGCACATAAAAAG
Seq A exon
GTATCTTTTAATACTGCTTTAAATTGTCTTTCCCTGGTCTTGAAGAAGTGGGCCTTTGGTATGCAATTAAGGAATGCTTTGTAACATGAATAAAGCTCTTGAAACTGAAGTTGTATTAGTCTCCTCGTGTAGATTGCCTAAGTCTTGTTAATGTGGTGTCAAATTCTTATAGTTTGTATGATGGAGTCTTCTCTGTTTATCGCTTTTGCTTCTGCTGGTAGCGCATAGATTTTTATGCTTTTAAATAACGTCATATGTTAATTTGCCATGGATGTACAGTTCTTGATATTTTTTGTTGGCTTTTTTTAAAATTTGCTTTGCTTTCTAAATCAGCTTGCATTTGTGCTCCCTACTCAGTCCTTTTCATATCCTGATATTCTTTTCCCTGCTGTCCATTATAATATTCCTTGTCTCTGCAATGCATCTTGGAACCAAAAG
Seq C2 exon
GAGACAGAGTCAGATCAAGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150:ENST00000280772:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains