HsaINT1005088 @ hg38
Intron Retention
Gene
ENSG00000137936 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:HGNC:973]
Coordinates
chr1:93588977-93592393:-
Coord C1 exon
chr1:93592265-93592393
Coord A exon
chr1:93589420-93592264
Coord C2 exon
chr1:93588977-93589419
Length
2845 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTCACCTTTTTGTCCCAAAGGTG
3' ss Score
9.45
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCCGAGAAACTGAAGAAGGAGCTGGAGGAGGAGCTGCTCCTGAGCAGCGAGGACCTGCGCAGCCATGCCTGGTACCACGGCCGCATCCCCCGACAG
Seq A exon
GTACCTGGTCTTGTCCCTTCCAGAGCATACACGGCTGCTCTCAGGCAATGTACAGATTGATGACCCGCAGGGTCCCACTCCGAGGCCACATGGGCGGAAGCACCTGTGTAACCAAAAACAAATACTCTAAAAATGACTTCATTTAGACCCTTCTCTAAGAAGACCTTGGGAAGAGCTGAGGTCAAGAACCCAAAGCACACATCCACATGTTCAGGAAGTGAAGGGACAGCCAGCGCTCCTGGGGTCTGCAAGCACAGCGTTGTGGGAGGCAGCAGCCACAGAGTCAGTAACCGGAAGAACTAGGAGGGCGGGCTGTGGCCCAGGTAATTGAACTCTTGGCCAGCTGCCAGCAGCCTCAGACCATTTGCAGCCCCTCCTTCTCAAGGCAGTGGCTTAGCTTCGGGAGGAGAGAGGGCAGGTGGCCCAGATCAACAAGGCTGCCTCTGCCCCATTGAGCTGGCAGTTATTCACACTCTCCATCACTTCCCTACTGGATCCTGTGACCCAGAGGTGGGAAAAAAGGGGAATTAAACCCATGACCACAGACTCATGGCCCAGAATATACTTTGTGATCGTCATTTGGGTGATTGCCATAAATAATGTTTTTTCATTTAATACTGTAAAAATTGAAAAATAGAGTAAGTCTGCAGAATTGAGGCATAGAATTTCCCTTGGGTTTTTATTGTAAACCTGATCTGGCCAATCATTAACCAAGGACAACATGACAGGAAGTGTGTGGACAGGGGCTGGGGGGAAGGGCATCATGTCGTAAGTTTTTTTTCTTTTTTTTGAGACAGAGTCTTACTCTATCACCCAGGCTGGAGTGCAATAGCACAATCTCAGCTCACTGCAACCTCTACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCTGGTAGCTGGGATTACAGGTGTCCACCACCATGCCCTGCTAACTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGCCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACTGTGCCCAGGCTTTTTTTTTTTTTTTTTTTTTTTTAATGTAGTAGATTTCTTGGCACAATCAAATAAATAATTATTATTCTGACTTTGTTTTTTTAAGTTTAAAATTGATTGTAGAAAACATAGATAGCAAAAAGAAGGAAATTAAACTCTTATCCATAATTCTCCTCATAATTCTCCTGGGGATAACCACGATGAATACTTTTGTGTACATACATCCTCCCGGGCTTTTTGAAATCAAGTATGAGATTGTACTACATATACTTTTTTGGTAGCCCATTCTACTCACTTACTATGTCCTGGGAATTTTCACCCACTGTAGAATATTCTTCTGCACCAGCCTACATTGTATGTCTGTCCACGGTATGCATGCACTACAATTTACTGGACACATAGGGTGTTTCTAATACTCTGACCAATATCCTTTAAGATTGCTGTGTTCATACCTACAATTATTTTCACAGGCTCAATTCTAAGAAGTGGCATTTCTATGTGAAAACATTTTTAAGGCAAAGATGCAATTTTAAAGTAACCATGGTAGCCTACTATTTTGACCTAACAGAAGTATACTGTTGATCAAATGTTGGAATGTTCCAGAAAAATTGTCAGAATTATAAAACCGATACTATCACCACCGTCCGTCTCCTTATCATGGTCATTACATTCGTTTACTACTTGCATGAGTATTAATTTTCAGTGATAAATCGTTCCAAACTGGATAACTGAACACTATAACCATAACCGTAATAACGAGTTATTGCTAACATTTTAGCCCCTTAAATCTTTGTAGCCATTCTATAGGTAATATTATCATTTGTGTTTTTCAGATGATATAAGTGAGCCACAAGGAGATTATGTAATTTGTCCAGAGTCATACAGCTGAGCCAGGATGCAAACCCAGGTGGTCAGGCTACAGGAACAGCCAGGCTGCACCACATTATAAATTCTCCAGTTGCTGTAAGCAGCAGCATCATGCTTGTTAACTATTTTTGAGCATCCACTGTGTTCCAGTGCTTACATATGTTATGTATACAAATACATAACCCTGATAGTAACTGTAAGATGAGGGACCCCAGCCTGACTTTGTTCTAGGCCTTCTAGCCAGTAATTGGTGTGTCCAGAATCTATACCCCAGTCCTGCATGTGGACTCCTCCTCCCCACTGGCCAGGCCTGGAGAGGGGCATCTTAGGAGAGGGCCCCTAGGATGACTTCTAGACACCAACAAATACCCTTCTTTCTCTTCACTCCACTTGTTGGGGAGGGAAAATCAGGCCTGCCAGGCACACATTTTCTCATTTCTTATTTCCTGTTTCATTACATCATTCAGGTCTGTATAAACGTCATGTTCTTGTGACACCTCCCCAACCACCCTATTTTACTGGACAGCCCTCATCCCCTCCCCGGCACTTCCTGCCTCCTTTCCTGGTTTACTTCTTCCCTGACCTTACAGCTGACATACCATAGCCACTGGTTATTTATCCTCACTAAAACAGAAGCTCCCCACCAAAAACAGGAGCTCCATAAGGTGGGCTCTTGTGTGCCACTGTCACCACTGCATCCCCTGAGCCTGCAGTGGTGCTTGGCACGAGTAGGTGGTCAGTGAATAGTTCTTGAATGAATGATTGGCTCTTCTATGAATTTGATCTTTGAAAAACTAAAGAGCTGACCCAAGAAGAGACATAGTAGCATTGTCTTCTGTTGGCCCAGAGAAGTGGGTAGCCATAAGCTTTTAGAAGGAATGTGAATTTGCCTTTCCTACTCCTCACTCACCTTTTTGTCCCAAAG
Seq C2 exon
GTGTCTGAAAACCTTGTGCAGCGAGATGGTGACTTCCTAGTTCGTGACTCTCTGTCCAGCCCTGGGAACTTTGTCCTGACCTGTCAGTGGAAGAACCTCGCTCAGCACTTCAAAATCAACCGGACAGTTCTGCGACTCAGCGAGGCCTACAGCCGCGTGCAGTACCAGTTCGAGATGGAGAGCTTCGACTCCATCCCCGGCCTGGTGCGCTGCTACGTGGGCAACCGCCGGCCCATCTCCCAGCAGAGTGGCGCCATCATCTTCCAGCCCATCAACAGGACGGTGCCTCTGCGGTGCCTGGAGGAGCATTATGGCACCTCCCCAGGCCAGGCCCGGGAGGGCAGCCTCACCAAGGGAAGGCCGGATGTGGCCAAGAGGCTGAGCCTCACCATGGGTGGCGTCCAGGCCCGAGAGCAGAATTTGCCCAGGGGAAACCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137936:ENST00000260502:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
NA
C2:
PF0001719=SH2=PD(87.7=48.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains