MmuINT1005378 @ mm10
Intron Retention
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122504927-122508571:+
Coord C1 exon
chr3:122504927-122505055
Coord A exon
chr3:122505056-122508125
Coord C2 exon
chr3:122508126-122508571
Length
3070 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATTCACCATTTTGACTACAGGTG
3' ss Score
6.6
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAATTGGAGGAGGAGCTGCTGCTGAGCAGCGAAGACCTACGCAGCCACGCCTGGTACCACGGCCGGATCCCCCGACAG
Seq A exon
GTATGCGCTCTGCTCTGTTCCCCTCAGGGACGCGCACACTGATGGCTCTGTTGAGTCCTGCTCAAAGACCACAGAACGCTAGTGCTAGAAAGTGACTTAACTTAGAACCGTCTCTAAAGAGACCTTTGGAAGAACCAAAGGTCGGACTCCAAATATATTTCCAGCCATGAGGGAAAGGACAGTGCTCCTTGGGGTCCACATACATGCGCAGAACCAGCTGCCAGAAGTACCTAGATGCCTGGAGTTCAGAAAATTAAGCTCTTGGCCAGTGGTCAGAGCCTCCTACTACTTGGACCCTTTTCTGAAGGCAGTGACTTATCTCAGAGAAGTTCCTGTGCCACAGGGTAGGAGACACAGACTGACAAAGCCACCCCTGCTTCAATGGGGCAAGCGAGTGTCCACTGTCTTCTGTCCTTCTTCACTGAGTCCTGTGACCCAAAAGATGGGAAGGAAGGGGGATTAGCCCAGGGACCAGGCTCATCCTTCACGGCTCAGGAGATTACACGTAGTTGTGATAAGTCATGTTGCTATTTGATACTGTAAGAATTAAAAATAGACTGAGTCTGCAGAATTGAAGTGTAAAGTTACCCATGGGATTTTATTATAAGCATAACTGGCCAGTCATTAATCAAGATCAGCATAACAGGAAATGCATGCCTAGGTCTAAGGCGGGTGGCGGCATGTTGTAAATACTGTCTTTAGTGTAACGAATTTCACTTTTTAAAATTATTATTTCGTGCTGGGCGGTGGTGGCGCACACCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGTTCTATGGAGTGAGTTTCAGGACAGCCAAGACTACACAGAGAAACCCTGTCTCAAAAACAAAAACAAAAAAATTATTATTTTGTTTATTTATTTATTGCGGGTGTGTGGAGTGTGCCACAGCACACAGGTGGATATCGAAAGACAACTCTCTTTCCGCCACGTGAGACTCAGGGATCTGAACTCAAGCCATTAGGCTTGGCAACAACCGCCTTTACCTGCTAAGCCACCTTACCAGCCCTATTTTTTTTTTTTAACACTTATCAAAGAAATCATTTTTATTCTGATCTTGAGATAATTTTTTTAACCTTAAAACTGATGGTAGAAGATCCAGATAAGAAAAGAGAAAATCTAACTCCTATCCCTAATTGTCTCCCCTGGAGGTAGTTGTTATGAGCATTCTCGTGCATATCCCTCCAGACCTCTTCAATCAAAACAGAGATCTTCCTGCTTTCTGTGGCCCACTCGCCTCACTTAATGGTGTGCCCTGGGAATTGGCTCCGGCTGTAAACTCTTTGGCTGCCCCAGCACACACTGTGTATATATATGGCTTTCACATACACACACATCACAATTTATGGGGTACTTAGAGCGTTTCTAGCAGCCTGAGCAACATCCTGTAAGATAACTACCACGTTCAGACCTATAATTCTTTCTACTGGCTCAATTCCAGGAAATGGAATTTCTGCATGAAAATGTATTTTTAAGGCAAAGAGCAGTTTTTAAGTAACCATGGCAGCACACTATTCTGAGCTCGCAGAAGTATAGCGTCACTTGGATGTTAGAATATCCTAGGGGAAAAATGTCATCACTTCTGTCCTTGTTAGCGCGCCAGGAGGGTGAGCTCTCAGGAGGACATCATTCTGGACGCTAACTGGAACCCGATGGCAAGGGAAGCCGGGTGCCAACACTGTCCCTTTGAAGGTTTCAGCCACTCTATAAGCAACAGCATTATCTACATCTTATGGATGATGTAACTGAACCACAAGGCACTTATGTAATTTGTCTAGTCACACAGCTGGGGCAGAATACAAACCTAGGTGGTCAGGCTCCAGCATGATGTACTGGATGGCTGGCAACATCAGCACCATAGTGGCTACCTGTGGGGCTGTCCACTGCATTACAGGCATTGTACTCCTCGTGCTTTGCCTATTTCTCATATGCAAATGGATTATCTTTACAATAACTTTGTGGGGTGAGGAAACCTCAAATGTCTTTGTATTTTTTTTTTCCTAGCCTCCTAGCTTGTCCAGAATCCACCATGCCATCCCTGGGTTCATCCTGCTCTGTAAACGGAAATCTGAGGAGGATGATTAGGGGACCCAGACCCAGATAGCCTCTTCCTCTTCCCTTTGGAAAAAAAAAATCAGACCCAATGAGCATACAACTTCATTTCGTCCGCTGTTTTACATTCTCTAAGTCTGTGTAAATGTCCTCTTCTTGGGACATCTTCCTGGCCACCCTCATTTGAACAATAACCCTTCCAAATAGCCCATCTCCCTTCCAAAGTTTTTCTTTCCTTAGCTTCACAATATTCAGACTCACCATACTTGCAGCCGTCTGTCCCGAGAGTGCTATACCAAATACACACACGCACGCGCGCACACACACACACACACACACACACACACACCACAAAGCCCCCGAGGAAGCACACTTAGTCATTGCTGTGTCTCCTGAGTCTGCAGTAGTGCTGGGCATGTAGAAGATGGTCCATAAATAGTTTGGGTGTTTTGTTTTGCATTTGAGAGGGGGATGACCTCAAATGAATTATGTATTCCAGGCTGACTTCAGACTTACAGTCCTCCTGTCTTAGTTTCCTGAGCACATTGATCACCCGTGTGCAGAGCCATACCCAGCTAGGATACAGTCCTTGAGTGTGTCATTTAACAAACAAACTAAAGACGTGACTAAAAAAAGGGAGTGATAGGAGATGGCCCGGTTGGTAAAATAGTCATCTTGCAAGGACAAGGATATGGGTTCGATCCCCAGAACCCTCATTAAAAACAAAACAAAAACAAAAATCAGGAGAGCCAGGTGTGGTAATACATGGAGTGGAGAGGCAGAGAGAGGCAGATACCTGGGTTGTGGGAGACCGATTGTGCCTAAGGAAAGACTCCTCTGGTCTCTGCACGCATGCGCACACATTCGCACACATTCGCGCACATGCGCACACAGCAGACATAGCAGCACTGCCTTCTGGAAGTTCTTGAGTGAATATGTTTGCCTTTCCTGCTCCTCATTCACCATTTTGACTACAG
Seq C2 exon
GTGTCTGAAAACCTTGTGCAGCGGGATGGGGACTTCCTGGTTCGCGACTCCCTGTCGAGCCCCGGAAACTTTGTCCTGACCTGTCAGTGGAAGAACCTCGCTCAGCACTTTAAGATCAACCGGACTGTCCTGCGGCTCAGCGAGGCCTACAGCCGTGTGCAGTACCAATTCGAGATGGAGAGCTTTGACTCCATCCCGGGGCTGGTCCGCTGCTACGTGGGCAACCGGCGGCCCATCTCCCAACAGAGTGGTGCCATCATCTTCCAGCCCATCAATAGGACAGTGCCCCTCTGGTGTCTGGAGGAGCGTTATGGCACCTCCCCGGGCCGAGGCCGGGAGGGCAGCCTGGCTGAGGGAAGGCCAGACGTGGTGAAGAGGCTGAGCCTCACCACAGGCAGCAGCATCCAGGCTCGGGAACACAGCCTGCCCCGAGGAAACCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121:ENSMUST00000029766:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
NA
C2:
PF0001719=SH2=PD(87.7=47.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types