RnoINT0025020 @ rn6
Intron Retention
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226655186-226658606:+
Coord C1 exon
chr2:226655186-226655314
Coord A exon
chr2:226655315-226658163
Coord C2 exon
chr2:226658164-226658606
Length
2849 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATTCATCATTTTGTCGACAGGTG
3' ss Score
8.2
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAACTGGAGGAGGAGCTACTGCTGAGCAGCGAGGACCTACGCAGCCATGCCTGGTACCACGGCCGGATCCCCAGACAG
Seq A exon
GTATGCGCCCTGCTCTCCTCAGGGAATCTCACACCGATGGCACTGATGCTCAAAGACACAAAACTCTAGTGCTGTAAAGCGACCTAACTTAGAGCTGTCTCTAAAGAGACCTTCGGAAGAGCCAAAGGTGGGACTCCAGTCATGAGGGAAAGAACAGCTCCTGGGGTCTATGTACATGTGCAGTACCAGCTGCCAGAAAGTATGGGGGTGCCTGGGGTTCGGATAATTAAGCTCTTGGCTAGTGGGCAGAGCCTCCTACCACTTGGACCCTTTTGTGAAGGCAGTGACTTATCTCAGAAAAGTCCCCGTGCCACAGGGCAGTTGTCACAGACTGACAAGGCCACCCCTGCCTCAATGGGGCCATTGAGTGTCTACCATCTTCTGTTCTTCTTCACTGAATTCTGTGACTCGAAGATGGGGAGGAAAAGGGATTAGCCCAGGGTCCACGGTTTCATGGCTCGGGGTACTTCACGTGGTTGCCATTAAAAATGTTTTTGTTCGATACTATAAGAATTGAAAACTAGACAAGTCTGCAGGACGGAAGTACACAGTGACCCATGGGTTTGCATTATAAGCATAATCTGGCCAGTCATTAATCAAGGACCAACATAACAGGAAATGCATACCTAGGTCTAAGGAGGGCAGCTGCATGTTATGAATACTGTCTTTGGTGTGACCAATTTCACTTTTTAAAGTCACTATTTTGTTTGTTTATTTATTTATTGCGCGTGTGTGGAGGGTGCCATAGCACACACGTGGATATCAAAAGACGACTTTCTACCATGTGAGCCTCGGGGATTGGCAGCAAGCACTTTCTCCTGCTAAGCTATCTTACCAGCCCCATTTTTTCCCTTACACTATCAAAGAAATCATTCTTATTCTGATCTTGAGACAAATATTTTTTTCTATAATCTTAAAACTGATGGTAGAAGATACAGACAAGGAAAAAGAAAATTCAACTCCTATCCCTAATTGTCTCCCCTGGAGACAGTTGTTATGAGCATTTTGGTGTATATCCCTCCAGACCTCTTCAATCAAAACGGAGATCTTACTGCTTTCTGTGGTCCACTCTCCTCACTTAATGGTGTGCCCTGGGAATTGACTCCAGCTGTAAACTCTTCTGCCGCACCAGCACACAGTGTGTATCTGGCCATCGCACACACGCATCACAATTTATGGGGTACTTAGAGTGTTTCTAGCAGCCCGGGCAACATCCTGTAAGATAACTACCATGTTCAGACCTATAATTCTTCCTACTGGCTCAATTCCGGGAAATGGAATCTCTGCATGAAAATGTATTTTTAAGGCAAAGAGGCAGTTTTAAAGTAACCATGGCAGCATACTATTCTGAGCCGGCAGAAGTATAGCGTCACTTGGATGCTAGAATATCCTAGAGAAGAAATGTCATCATTGTCCTTGTTAGAGTGCCAGGAGGGTGAACTCCCAGGAATACATCCTTCTGAACTGGCTAACTGAAACTCTATGGCAAGGACAGCAGCGTGCCAACATTCTATCTCTTTGAAGCTTTCAGCCGCCCTGTAAGAAACAGCATTACCTACATCTTATAGGTGATATAACTGAGCCACAGGGCGCTTATGTACTTTGTCTACTCACACAGCTGGGGCAGAATGGAAACCTAGGTGGTCAGGCCCCAAAATGATGGACTGGCTCAGTGGTAAGCATCAGCACCATGGCGGTTAACTATGGGGGTATCCATTGTATACTTGGGCTTCACCTCTTTCTCATATGCAAACGGATTATCTTTAAATAACTTTGTGAGGTGAGGAAACCTCAAGTGACTTTGTTTTTCCTAGCTTCCTAGCATGTCCAGAATCCACCATGTCATCCCTGGGTTCGTCCTGCTCTGTAGCTGGGAATCTTAGGAGGATGTTTAGGGGACCCAGATAGCCTCTTTCCTCCTCCCTTCCCTGAATACAAGGAAAATCGGACCCAACAGCACACGACCTCATTTCTTCCCGCTGTTTTACATCCTTCATCCCTATGTAAACGCCCTCTTCCTGGGACATCTTCCTGACCACCCTCATTTGAATGACAACCGCCCCAAGTAGCCCATCTCCCTTCCAAACTTTCTCTTTCCTTAGCTTCACAGTATCTGACTCACCATACCTGCAGTTTTCTGTCCTGAGAGTGCTATACCATACACGCGCATGCACGCATGCGCGCGCGCGTGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGAGCCCGCGAGGAAGTACACTTAGTCATTGTTGTGTCTCCTGAGCCTGCAGTAGTCCGGGGCATGTAGAGGATGGTCTATAAATAGTTTGGGTGTTTTGTTTTGCATTTGAGAGAGGGCTGACCTCAGATGTATTATGTACCCCAGGCTGGCCTCAAACTCGCAGTCCTCCTGTCTTAGCCTTAGCTTCCTGAGCACGTTGATCACCGCTAAGCATGGCCATACCCAGCTAGGATACAGCTCTTGAGTGTGACATTTAGTAAACAAACTAAAGATGTGACTAGAAAAGGGAAGCTGGGAGATGGCTCAGTTAGTGAATAGTCATCTTGCAAGCAGATGGATCTGGGTTCAATTCCCAGAACCCACATTAAAAACAAAACAGTGTGGTAACACATACACTGGGGAGGCAGAGAGAAGGAGATCCCTGGCTCGTGGGTTACGGATGGTGCCTAAGGAAAGACTCCTCTGGTCTCTGCACGCATGCGCAAGCATGCGCACACAGAGGAGACATAGCACGGCCTTCTATTAAGCTCTTGAGAGAATTGGTTTGCCTTTCTTGTTCCTCATTCATCATTTTGTCGACAG
Seq C2 exon
GTGTCTGAAAACCTTGTGCAGCGGGATGGGGACTTCCTGGTTCGTGACTCCCTGTCTAGCCCTGGAAACTTTGTCCTGACCTGTCAGTGGAAGAACCTTGCTCAGCACTTTAAGATCAACCGGACTGTTCTGCGGCTCAGCGAGGCCTACAGCCGTGTGCAGTACCAATTCGAGATGGAGAGCTTTGACTCCATCCCCGGGCTGGTACGCTGCTACGTGGGAAACCGGAGGCCCATCTCCCAGCAGAGCGGCGCCATCATCTTCCAGCCTATCAATAGGACAGTGCCCCTTTGGTGTCTGGAGGAGCGTTATGGCACCTCACCAGGCCGAGGCCGGGAGGGCAGCTTTGCTGAGGGAAGACCAGATGTGGTGAAGAGACTGAGCCTCACCACAGGTGGCATCCAGGCTCGGGACCACAGCTTGCCCAGAGGAAACCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737:ENSRNOT00000065111:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
NA
C2:
PF0001719=SH2=PD(87.7=48.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]