HsaINT1006594 @ hg38
Intron Retention
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136292161-136297821:-
Coord C1 exon
chr9:136297714-136297821
Coord A exon
chr9:136292296-136297713
Coord C2 exon
chr9:136292161-136292295
Length
5418 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTATGTTTTCTCTGTTTAAGATT
3' ss Score
9.08
Exon sequences
Seq C1 exon
TTCTGAGGGAAAAACCCAAAAGGGTCAAAAGCAGTTCTTGCAAAAGAGAGAAGACCCCCAAGTTGCCCTCCCCTAGAAGAGCGGCCAAAGACAAACACAAAGACGAAG
Seq A exon
GTAAGGTTTGCTATTTTGGGGCCCTGGCACGCTAGGTGCATATGATCCTGGCACTCTAGGTAGGCAGATGGCTTTCATTTCTGGGGCTGGGGCTGGGGCTGGCCAGTCGGACTGCCATGTACACAGGGTTCTGCAGGGCACCTGGGATCGGCAGGCCCGGCTGGAGCGTCAGGGCTGGTGTCCCAGGCAACTGGTGACCTTGGCCACCACTGGAGCAGCAGGTGGTTCCTGTCCGGGCAGGGGCGTGTCCCTTGAGACAAAGTGAAAGTCCACCAAACACCAGGCACTATTGTCCTCTCAACACCCAGAGACTGGGCGAGTCTAAGAAAACAGAGCTGTTCAACCACACTGTAGCATGCACTGGCAGCTCACGGTACCCGCAGCTCACACCACCTGCAGCTCACACCACCCGCAGCTCACACCACCCGCAGCTCACGGCACCCGTAGCTCAGGGCACCTACACCCCATGGCACCCGCAGCTCAGGACACCCACAGCCCATGGCACCCGCAACTCACGGCACCCACAGCCTACGCCACCCACAGCTCACGCCACCTGCAGCTCACGCCACCTGCAGCTCACGGCTCTTCAGAGCAGTAACAGATACTGGCATGTGTGCACATGCAGTGGGCAGCTCAGGGCACGCTTGGCCGAGGGAGCCGTGCTTGCTTTCTTTGTCACACGTTCACATTTAGTGAGCAAGCCCAGGGCATCTCCTTCCACCTGCACACTTGGGGGTGGGAGAGGGTCTTCCGCAGACCCCACTCCCTCCAGTAGCTTGGGGACTTTGTGCAGGCACAGGGGGTGTGTGAGTCAGCCATGTGCTTGCATTACGATTAATTTCATGCGTGTTTCCCGGAGAGTCCAGTCAGGTAATCCTGTGGGTGGATCCCAGTGGTCACAGAGGAATTTCTGATCCAGGCATCTCCCTGCTGAGGACTGGGCAGAGGTGTCAGTGCCCTGCAGAGACCCAGCGGCCCAGCCTGGGCATGGGTTTCAGAGCTTGCAGGGCGAACCTGACAGCGGCCCCTGCCCTTGAGCGGGTGGGTGGCAGGCAGAGTCCCTCTGGGGCTTCCTTCTGGGGCGTCTTCGAGGTCAGGGGAGTGGCCAGTGCCCGCACTCTGTGAGCTCACTGCAGCCTCCTGGTTCCCCGCCAAGGTTGGCAGTCTTGCTCCCATTTTGTAGATGAGGCAACCGAGGTTCACAGAGTTTCCACAGCCTGCCCGGGGCTGCACAGAGGCAGAGCCTCCCACCCGTCCAGCCCAAGGCCGGTGCTCCTAACCTGGAAGCCCAGCCGTGTGCACCTGGGGCCACGCCTGGGCAGCTTGTCGAGGCCACCCTCCAGGCGTGGATTCTGGGGCCACCGAACCACAGCGTTTTGGAGACACCAGCAAGAGCCCCCAGGTGGAGTGAACGCCTGAGATTGGCTTTGTGGGACCCTCACTCCAAGTGTGAGCAGTGCCAGCTCGCTGGCCACTCCTGTAATGCTCCATGCCTCAGTTTCTCCACACTGCGTGCAATCACAGCCCTGGGGCCGTGGGGAGGGGCACTGCGTGGCGTGCGTTCTGTCCGTGCCCAGGTGCCTAAGCATCTGTCCCGTGTCATCAGTTGCCGGCCCCTCTGCTCCTAGGCAGAGCAGCAGCTTCCAGCCGAGAGTAAACGCCTCTGTGCCCATACCCAGAGAGGACACGCGGGTGAGGTGGGAGCTCAGCGGGGCTGCGGGGCCACCGTGTGCATTCAGCGGGGCCAGAGGCCGAGCAGAAGGGGACTGCGATGTAGGGACCCGGGCACCCAGAAGGTTCCGGAAGGCCGTGGAAACATGCGTACAATATAACAATTTTCTGCATGATCACCCCCTCCCTCCCCCAGGTCTTTGGTTTGTTTTATTTTAATGGCTCTGTTGAAAAATGACCTGCTTTCTGCCTGACACTGGGTCAGAGGGCATGCCACCGGCCGCATTCATCATCGTAAACACCGTGTCACCCTGACAGTGTTGACCATTAGTTTCTGTCAGTGACGAAGTCACAGCTGGGCTAAGGAGAGATGAGTTTCGGTTCAGAGGTCAGAGCCACAGGACTTGGGAATTGGATGAATTAGAAATTTGCTGTAGTTAACAAAAAATTAAATCACAATAGTTATAAAATATTCATCCATCCGGGCCAAAGGAAAATGAAGCCTGATATTTAATTTCAGATTATATCACCTCACTTTGCATTTTTTATCATAGATTAGGTCGGCCCCAGAACTTTGACAGGGCACTTGGGGACTTCATCCATTTCCACAGATTAAAAATCCTCTCGTAAAAAAATTAATTGCCATTAAACTGCTCAGCGGAAGAAAAAATGTGCCCATCAGGACCCATTTATCGAGCGGGACCCTCTGGCGGGCTAATGGGGAAGTGAGTGGCCAGCAATGGAGGGGCCGGGCGGGCAGGCGGGCAGCCCCTCCCCAGGCGGGTCCCTGGCCCAGCAACCCAGCGAGGGAGAGCAGCTGTAGGGACTAGGATGGAGAAACCCCACCGGGGCTCCCCTCCACGCTGGGTCCCCCCCGAAACCCAGCTGTGACCAGTTGGGTCACGCTGGCCTCAACTCCGGCCTTTGACACCACCCTGAGCCAGTGGAATCCTGACCCTCTTCCAGGCCTAACTCCTGCAATGATCGTGACTGCCCTTTCATTCTTGTGGCCCTATGGGAGGTGCTGTGAGATAGGCACCCCATTTTACAGATGGGGAAACTGAGGCATGGATAAGTGAAACACTTGCCTGAGGCCCATGGCTGGTGAGTGGCAGAGCCAGACTTAAACCCAGGTCTGAGAATCCTGAGACCACGCCCTAAACCTTCCTCTACCTTGGGGTCCTGTCCTAGACAGTGTATGGCCTTAAGGGGTCCTGCCCTAAAGTGGGTGTGGGGCATGGCCTGGGGTCCTGTCCTGGAGAGGCCGTGGCCATGGGAAGCCTGTCCTTGGGGACGTGGCTTTGGGAGGGCATGGCCTGGTGGGTGCAACCATGTAGCCCATTCACCTTCCTGGAGAGGTAGCTTCAGGCCTGTGGCTGATGGCCAGGGGTCAGGGCAGTGTGAGGAGGGTGCCGTGTCTGGGGGGTGCTAGGGAAGTCCCTGACTCAGTCCGGGAGCCTGCCCCTGGGTGCTCAGCTCTCTGGATGGTCCCTGCCCAAGGCACTCTCATTTGGCAGAAAGTCCCCCTTCATGGGGGCCAGGGCCAGCCCTGGCTGAGACTCCACAGTGGTCTTGACCCCAGGCCACGGGGTGGAGCTGCCCTGGGCTGGGCCTAAGGAAGGGGCATAGGGGCCAGGGACCCTTGGCATGTGTGGTGTTGGCCCTGCAGAGCCAGGTGGAATAAGCAGTGTGTGTGAGTGAATGTGTGTGTGAGAGCACGTGAGGGCATGTGTATATGAGCGTGTGAGAGTGAGAGCACATGTGAGGGCGTGTGTATATGAGCGCGTGAGAGTGTGAGACCACGTGAGGGCGTGTGTATATGAGCGTGTGAGTGTGTGTGAGAGCACATGTGAGGGCGTGTGTATATGAGCGTGTGAGTGAATGTGTGTGTGAGAGCATGTGAGGGCGTGTGTATGAGTGTGAGAGTGTGTGAGTGTGAGCACTTGAGGGCGTGTGTATATGAGCGTGTGAGTGTGTGAGAGCACATGTGAGGGCGTGTGTATATGAGTGTGTGTGTGAGAGCATGTGAGGGCGTGTGTATATGAGTGTGAGTGTGTGTGTGAGAGCATGTGAGGGCATGTGTATATGAGCATGTGTGTGTGGGAGAGCACGAGGGAGTGTGTATATGAGTGTATGAGTGTGTGTGGTTGTGTGTGAGCGTGTGAGTCAGAGAGCATATGAGACTGAATGTGTGTGAGAACGAGTGTGTGGTAGTGTGAGTGTGAGAGCATGTGTGTCTGTGTGAAAGTGTGTGAGGATGAGACCGTGTGTGAGCATGTCAGTGTGTACAAGTGTGTGTGCATGTGTGAATGCATGAGTGAGCATGTGAAAGCATGTGACTGAGCATGTGTGACAGCACGTGCGAGGGCATGCGTGTGACAGAGTGTGAGCATGAGTGTGAGCATGCGAGTGCCTGTCAGCATTGGCGTGCATATGTGTGAGCCTGGGAGCACGTGAGGGAGTTGTGGGCACGTGTGTGACAGTGTGTGAGCATGTCAGTGTGAGTGTGTAAGCGTGTATGTGAGCATGTGTGTTTGTGAGTGTGTGAGCATGTGTTTGTGAGTGTGTGAGCATGTGAGTGTGAGTGTGAGCATGTGTGAGTGTGTGAGCATGTGAGAGTATGTGAGCATGTGAGTGTTTGTGAGTGTGTGAGCATGTGAGTGTGAGTGTGTGAGCATGTGAATGTGTGTGAGCATGTGAGTGTGAGTGTGTAAGCATGTGAGTGTGAGTGTGTGAACATGTGTTTGTGAGTGTGTGAGCATGTTAGTGTGAAAGCATGAGTGAGTGTGTAAGCATGTGAGTGTGAGCGTGTGAGTGTGAGTGTGTGAGCATGTGTTTGTGAGTGTGTGAGCATGTGAGTGTGTGTGAGCATGTGAGTGTGTGAGCATGTGTTTGTGAGTGTGTGAGCATGTGAGTGTTTGTGAGTGTGTGAGCAATGTGAGTGTTTGTGAGTGTGTGAGCATGTGAGCCCAGGGCTGGCCCTACCTCCGGCCTTTGCCAGGGCCCTCGCAGCTGGGCCCACGGGGCTGGTGGGGCTGGTGTTGGCATCGGTGGCCGTGAGCTGGGCTGTGAAGTGCCACCTGGATGAGCGCCACTCACTGCATGATGCCATTTGCGTGCGAAGGCTCGTTTGTACTCGGGACGTGGGGCCGTTTGCTGCAGCGATGCCCGGGACTCCCTGCCCTGCCAGCCGGGGAGCCTTCACCGCTGCCCACCCGTGTGACTGCTGGCTCTGCTGGCTTAAAAGCAGGTTAATCTCCTGTGGCTCGGCACACGTGGCCAGCGGTGACAGGACCTCCCGTGCTGCGCGGAGCCCGATGTGCAGCACGGAGCGGAGGGTGGGGCTGCTGGCTCGCGGTTGTCACTCCAGCTGCTGCTGCTGCTCGGCGTTTCTTTCACATGTGCTGCGTGCCCGGCCTGTGCTGAGAGCTTCACCGGCAGAGCTGTGGGGCAGGTCCTGTTGTCCACGATTTCCTGAAGAGGACTCTGAGGGTCAGGGAGGAGGAGGACTCTGAGGGTCAGGGAAGCCACCTGCCCATGGCCGCCCTGAGACTCAGCCTTGCCCTGTGCAGGCTGAGGGTCCCGCTCTGCCCAACAGGGGCCTGGACATGAGGGATATCCTCCCGGTGCCTTCTGGGAGTGTTGAAGTGGCCTCCTGGCGCTTGCAGAGCCACCAACCTCCCCGTCCGGGCCAGTGCCCAGAGGGCCATGGGGCGCCCGGCTGTGTGTATGTTTTCTCTGTTTAAG
Seq C2 exon
ATTCGGAGCTGGTTGGTGTTTACGCCTGGAGAAAGGGACAAGCTCTGGTGAGGTCGCTGCTTGGGCCCCCTCCCGTCCTCCGCAGGCACCATAGCAAGGATCCCTCGAGAGACCCGGCTCTCACCGTGGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220:ENST00000569961:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains