HsaINT1007851 @ hg38
Intron Retention
Gene
ENSG00000159212 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr21:34706027-34707389:+
Coord C1 exon
chr21:34706027-34706080
Coord A exon
chr21:34706081-34707279
Coord C2 exon
chr21:34707280-34707389
Length
1199 bp
Sequences
Splice sites
5' ss Seq
AGAGTGGGT
5' ss Score
1.31
3' ss Seq
ATCTCCTTCTCCACTTGTAGGCT
3' ss Score
10.18
Exon sequences
Seq C1 exon
GTAAAACTTACTGCATTAGGCTGTTCTCGCATTGCTATAAAGAAATACCTGAGA
Seq A exon
GTGGGTAATTTATAAAGAAAAGAGGCTGAATTGGCTCAAATGCTGCAGGCTTTGTAGGAAGCATGGTGCTGGCATCTGCTCAGCTTCTGGGGCAGCCTCACAAAGCTCACAGTCGTGGAGGAGGGCAAAGGGGGAGCAGGCACGTCACATGGCCAGAGCAGGAGCAAGAGAGAGGGAAGTGCCACGTACTTTTCAACAGCTCAATCTTGTCAATCTTGCAAGAACTCACTGACTATCGAAAGGGCAGCAGCAAGGGGATGGTTCTAAACCATTCATGAGAAATCCACCCCCCGACCCAATCACTTCCCGTCAGGCCCTGCCTCCAATACTGGGGATTACAATTCAACATGAGATTGGGGCTGGGACAAATATACAAACCATATCACTTATATTCAGTAAAGTACCCAAACCTTAAGACTTTTATCACTCACATACACCCGTGTAGCCACCGTGCAGATCAAGACATAGAACAACATTGCCACCACCCAGAAGCCTTCCTTTTGTCCTTCTGAGACAATAGTATCTTCCAGGGACATCTGCTGTTGACTTCCACCATCATAGACAAGTTTGCCCTCTACCTACCCTGAATCATGCAGGAAGCTTTGAGTCTGGTGTCTTTCTCTCAACATTGTGTGTGTGAGATGCACCCACACTGTTGCTTGTATAATAGCTAATTCTTTTCCATTGTGGTGTAGTATCTCAAGGCATGGAAATACTACACTGACACAAGTATTCTACTCTTGATAGTATCTGGGTTGTTTCCAGGTTTTAGCTATTATACCAAAGCTGCTAAGAATAGTTGATCCTTGGAGAGGATCGAGAGATAGAGGGAAGGAAAGGGCGTGTCTTTCTTTTTCACATTGGTGATAAAGGGAGTTCCCATTGCTGCTCCTTCCATCAGTGAGCTGCTGCTCAGAGGCCCAGTGTGGCAGGCAGTGGTGAGGTGGTGGGGAAGGAAGAAAGAAAATGCTCAGTGCAGTGCATACATGTGCATGTGCGTGCGTGTGTGGTGTTCTCTCCCCTAACCCCTACATCCACCGCCAACTCCACATTGAGGCTGGTAAAATGGCCTCAGGAGGATATTCGCAGCATCCTGACCGTTCTTATCAACCTGCAATGATTTTGCATGTGCATGTTGTGGTGTTGGCACTTATAATTGTGAGACTGGCTCAGATAGAAATCTCCTTCTCCACTTGTAG
Seq C2 exon
GCTGGTTATGATGGTGAGAGTATCGGAAATTGCCCGTTTTCTCAGCGTCTCTTTATGATTCTCTGGCTGAAAGGCGTTATATTTAATGTGACCACAGTGGACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159212:ENST00000360731:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains