HsaINT1008101 @ hg38
Intron Retention
Gene
ENSG00000204248 | COL11A2
Description
collagen type XI alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr6:33181111-33185054:-
Coord C1 exon
chr6:33184992-33185054
Coord A exon
chr6:33181171-33184991
Coord C2 exon
chr6:33181111-33181170
Length
3821 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TACATGTGTGTCTCCTTCAGGCT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GACCCCACCCCAGGTGAAGAGGAAGAAATCCTGGAGTCGAGCCTCTTGCCACCCCTTGAGGAG
Seq A exon
GTAACTCTATGCCCCACCCTCACCCCATCTGGGGGCAGTGGGCACCTGTGACTCACTCCCCTCAGCCCATGACGTCTTGATGGACCAGCCCCTCCTCTGGCCGGAGGGTTCTTCCTCATTTCCATCGATGGCCTCTGTCTTTGGGTCACTCTAGAACTATGGGCCTGCTTGACTCTCTAAGTCCAGCCCGTTCCCTTCAGTATCCAGGCCTCCTTCCATGATTCTTTGATTCCTGAGTGACTTCGTCTCCATGTTGGTGTCTAATGGTCTTACTTTCTATGTCCTATTTCTGTTCCCGGGAGCCACTTTCTGTCCAGTGTTGTCACCTTTTGTCTTCCCTATCTCTTTGGTCATTCCTGGACTCCTTTGTCTGTCATTGTGTCCATGGACTGTCCACTCTGCATCCAGTCCTCTGGCCACCCTTCATTTTATCCACCACTTCTTCCCACTGGACCCACTTTCTGGACATCTCTCCCCATTTTTGGCCTTTGATGGCCCTTCCATTTATATACAACCACTCCCATGGCTATTCTTGGGAGAAAAAATCCAGTTCTGATTAACCTTGGAATCCTTTGGGCTAGAAGTTGTCACACCCTGGGGTCCAGGGTAAGCCTCCTCTCAGCCCTAACATCCCCATCTACCCCTCTCCCTCCCCATCCCTGGGAAGGAGCAGACAGATCTCCAGGTCCCCCCCACAGCCGACAGGTTCCAGGCAGAGGAATATGGGGAGGGTGGCACAGACCCCCCTGAAGGGCCCTACGATTACACCTATGGCTATGGGGATGATTATCGTGAGGAGACAGAGCTTGGCCCTGCCCTCTCTGCGGAGACAGCCCACTCAGGAGCCGTAAGTGAAAGGAGCTTCTCTTTCATTCTTGACTACCAGTGGGAGCTACAAGAATTGCTTCTTGTTGGTTTCGATCCTTGGCTGTTGGCTGTGAGCTATTTCCCATCTGTGACTTGTCATTTTCTGTTCACATATGATGTATATGTTGCTTGAAAAGATTACTACCTGCCTTCCTTTGCCAAATGTCTTACCTTGTGACTCTTGTGGATACTTCTGAAGCTCAGGGCAATTGGGAATTAAAAAAAAAAAATATGTAGCCACTTCCTGTCTTTCTTGATCACTTCCTGTCTAACTGAAGCTGGATTTCATAAAGCTTTTGGTCAATAAACTACTACCTTGTGTCCATTTTCAGTGTTTCTCTATCATTTCTTCTTGGTGAAATAATTTTTTGTTCATGTTTCTACCAAACGATCTAACTTCCTATGTCACCTTTTTTTAACCTACAGGCCACTTATTATCTGTCCCTTCCTGCCTTCTCCAGCTGTGGCATCCATCTTGGTAACTGTGTCAGGTTGGACTGCAAAGGATTTATTATTTCTGTTCTGGCTCTAGTTTTTCATGCTATCTTGTGACAATTTCCTTTGACAATAAGCCACTTCCTGTATGTCTCAGGTCATTTAAATCATAAAGTTTCCATTGTGGGCCTCGATATTTCTCATGGCTACTTCCTGTGTGTCCTAGCCTTGATGTTTGTGTTTTCTGGAAGAATTACCCTTCACTGTCATGATTCCCTTTGCAGGAGTCACATTCTACCTGTTTTGTGCCTTTCTTTTCTCTCTGGGTCACGGTAGCCATGTTGTTGTTGAAGGTTCACTTCCTGGATCCTCTTTCCTTCACTGCTTCCTGTCTGTTCAGCCACTTCCTGTTTGTCCAGTTTGTTTTCTAGCCATGTTGGCCATGTTTAATTTTCTTCGGCCCTGGCATCATTCTTGCTTCCAAGTGTTTGTCATTTTGTTCTGTGTCCCTTAGTTGTTCTCATATCTTCCAGTATTCCCTGTCAGTGGGACTGCTTCCTGTCTACTCCGCTCCGTCTTCTGCCTGCCTTGCAGTTCTGGCTGCCTCCTCTACCCTGCTGCCGCATCCCATACCTCCCCTCTCTTGCCTCCCTTGAGCTTCTACTGCCTTTCCTTTATGCTGCTCTCTGGGTATTTGGGGTTGATATGGGATTTCAGAGAATTTTGAAACGGATCATTGCTGTTTGGTCAGAATGAAGGTGGAGAGGGGCATTCTGAAGATCTTTGTTGGGGGGAGTTGGGGTGGTGGTGAATGTCTCCCATTCTCCATGTTCTTATTTTGTTTCTGGCCCTAGAGTTGGGAACAGGTATCTGAGTGGAGGTGTGCAAGGGAGGGAACTGGTGGGCTTGGAATGTACTTGAGGGCCAGAGGAAGGGCAATGCATTCAGTGGGGACTGCTCTCCAATTTTTTTTTTTTTTGAGGCAGGGTCTCACTCTGTCACCCAGGTTGGAGTGCAGTGGCAGGATCTTGGCTTACTGCAACCTCTGCCTCCTGGGTTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGGCATGTGCCACTGCGCCCGGCTATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACATGTTGGCCAGGCTGGTCTCAAACTACTGACCTCAAATAAGCTGCCTGTTTCGGCCCCACAAAGTGCTGGGATTACAGGCGTGCGCCACCGTGCCTGGCCTCCAAATTTACTTAGAGTATGGATGCTTAACCTTTGGGGCATATTTAAACTTGTGAACCCTTTGAAATCCTAAATAAAATTCTGTGCATAATAGCATATACTTTTTCATTTCTGGAGAAAGACTCACAGCTTTCATCAGATTCTTTTTTTTCTTTGAGATGGAGTTTTGCTCTTGTTGCCTAGGCTGGAGTACGATGGCATAATCTTGGTTCACTTCAACCTCCACCTCCTGGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACACCCAGCTAATTTTGTATTTTTATTAGAGACGGGGTTGCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCCGCCTCCCAAAGTGCTGGGATTATGGGCGTAAGCCACCTCGCCCGGCCTAGCTTTTATCAGGTTCTCATGTGGGTCCATGCCCTCCTCTTACCCCAAATAAAAATCTACCCACAATCTTAGAGAGATTCTTTTATGATGTATTGGGGTAAATGTGTGGAAGGTTTCTTAAGGTTCTAGGGAGGGAGTTTGGGAGATGGGATAGGGTCCTCTAGAAGAGGGTTTGGGAAGGTGGGTGGTTTAAAATCCCTGAAAGGGGCCAGGTGTGGTGGCTCACGCCTGTAATTCCAGCACTTTAGGAGGCCAAGGCAGGCGGATCACCTGAGGTCAGGACTTTGAGACCAGCCTGGCCAACACGGTGAAACCCCATCTCTAATAAAAATACAAAAATTAGCCGGGCATGGTGGTGCACATCTGTAATCCCAGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCAGAGGTTGTAGTGAGCCGAGATCGCGCCACTATACTTCAGCCTGGGTGACAGAGCAAGACTTCGTCTCAAAAAAAAAGAAAAACAAACAAACAAACAAAAACACTGGAAGTTTCTGGGGACCTTCCTGAAAGAGGCTCTCAGGGAGATGGAGAGGTTGTGTTTGCTGAGGTGGGGCTGGGAACTGGGGGGGCAGGGAACCCTGAGGTCTCCTTGGCAGGCTTGAAAGGTTTGTGAAGAGGGAGTTTTAGGGGAGGGCTGTGGGGCTTTCGGGTAGGGCTGAAGTGGTCTCGAGAGGATCTAAGAATCAAGGTTGGAGTTGAGATGGAGAAAGGCCTAGTGTCCTGGCTGCTCACGGGCCCCACTGGGGGCTACATGTGTGTCTCCTTCAG
Seq C2 exon
GCTGCCCATGGACCCCGAGGGCTGAAGGGAGAGAAAGGAGAGCCTGCAGTGTTGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248:ENST00000374708:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.977
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains