HsaINT1010492 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41120347-41121618:+
Coord C1 exon
chr19:41120347-41120496
Coord A exon
chr19:41120497-41121457
Coord C2 exon
chr19:41121458-41121618
Length
961 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ATTGCACTCCTTACCCTCAGGCG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GCATCGCCTTCTCCAGTGGGGATCGATGGAAGGTCCTGAGACAGTTCTCTATCCAGATTCTACGGAATTTCGGGATGGGGAAGAGAAGCATTGAGGAGCGAATCCTAGAGGAGGGCAGCTTCCTGCTGGCGGAGCTGCGGAAAACTGAAG
Seq A exon
GTCAGGAATTTTTTTTAACAGGCTGGATGGCACGATCTTTTTTTTTTTTAACAGGCTGGATGGCAGCCTTGACCTCCTGGGCCCAAACCATCCTCCCACCTCAACCTCCCGAATAGCTGGTACTTCAGGTGTGCTCCACCACACCCAGCTTATTTTTAAATTTTTTGTAGAGACAGGGTCTCACTATGTTGCCCAGGCCAGTCTCAAACTCCTGTGTGCAAATGATCCTCTTGCCTCTGCCTCCCAGAGTGCTGGAACTATAGGCATACACCACCATGTCTGGCCAGGTCTTTGAATCCAGTTCATCCTTATAATTCACATCCATTCTACTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCCCCCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCATTGCAACCTCCGCCTCCTGAGTTCAAGCGATTCTGCTTGCTGACTGCTCTGTCGCCCAGGCTGGGTTGCTGTGTACTAGCGTGTGTTGTGTGGCAGGATTATGTAGCTGTATGCTGGCTTTATGTGTTGGTGTGTGGTTACCGTGTCTTGGGATGTTTCCGGGCTGGCTGTTAGGTCACTGCGTGTCGTGTGTTGGCATGTACTGTGATCGTATTTGCTGGGTGTTCTGTTGCCCTGTGTTGTTGTGTTCCGTGATGCCTGATGATTGCCTTGTGCTATGTCGCGTGCTGTGTGTTGTGTTGCCAAGAATAGCCCGTTCTGTGGTTGGGCGTTGTTGCTGTCGATGTGCTGCAGGAAGTTGTGGGTTCGGTGCCGTCTGTGGCATTGACAGATGCTTTTGGGGTGTCGTTAAGCAGCATGTTGTGACCATGTCCCCGTGTTTGCACCGTAAGACACGTTGCCATGGTTGAGTCGGATGTTGTACAAATTAATGGTGTTGCTGCATGAGGTCTGGTGTGCTGCACATCGCGTCTTCCTGATCCATTGCACTCCTTACCCTCAG
Seq C2 exon
GCGAGCCCTTTGACCCCACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTCCGTGCTCTTCGGCAGCCGCTTCGACTATGATGATGAGCGTCTGCTCACCATTATCCGCCTTATCAATGACAACTTCCAAATCATGAGCAGCCCCTGGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCTTCTCCAGTGG
R:
GGGGCTGCTCATGATTTGGAA
Band lengths:
302-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains