HsaINT1010523 @ hg38
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450 family 4 subfamily F member 12 [Source:HGNC Symbol;Acc:HGNC:18857]
Coordinates
chr19:15682389-15683763:+
Coord C1 exon
chr19:15682389-15682510
Coord A exon
chr19:15682511-15683492
Coord C2 exon
chr19:15683493-15683763
Length
982 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTTCTGCCCTTGCTCTGCAGGAG
3' ss Score
10.89
Exon sequences
Seq C1 exon
GACAAGTGGCAGCACCTGGCCTCAGAGGGCAGCAGTCGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTACAGAAATGCATCTTCAGCTTTGACAGCCATTGTCAGGA
Seq A exon
GTGAGTTCCTTCCTAGGGCCTGGGATATGAATCCATGGACCAAAGGGAGAAAGTTGGGGAGGGAGGAATGAGCAAAGTAACCAGAAGTACCTTTCGGGAGGATTTGTATCATAGCTGTGCTTTGAAGGTCGAGGAAGAGGAGAAAGTGCTGTCTTTCCAGGTAGAAATATGTGTGTAAAAGCAAGAAGGTTAGGATGAGCCAAGCATGTGCAAGAGACAGTAGAAATGAGGTTGTGGAAGTAGGGGCTAGATATTAAGGGCACTGAAAATCAGGAAAAGTGGTATGAAGTTTATCAAGACATTTCCAGAGACCTTTTGTAGTTTCAGCTGATGATGGATGTGATAAGAGCTGAGCTGTGTGGGAAACTGATAGCCCACCACCACGCCCAGCTAATTTCTGTATTTTCAGTAGAGAGGGGGTTCACCATGTTGTCCAGGCTGGTCTCAAATTCCTGACCTCAGGTGATGTGCCCTCTTTGGCCTCAGAAAATGTTGGGATTACAGGCATGAGCCACTGTGCCCAGCTGCTTCTTCTTTCTTACAGGGTGAAAGAGAGAGGGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGTTGGTTATGCTGGGGGCTGGAGCAGGGCTGAACTGGAAGAGGATGAAGTCTGAGTTGTGTGGACAGTTTTGGTAAGGAAAATGATCAGTACTGCATACTGGATGGGAGACAGAGGAGAGAAGCATGGTGTCCAAGCTATACTCTAGGTGCCTAGGTGCATGGAGACAGCTCTCTCAGAGATAGGATGCAGGGAGAGAAGACAGTCTAGAGAGTCAGTCTCATGACTGATACCCACCATGTATCTCTAGGACCATCTATTTCTAGATACTCAGTTTCCTGATGGGAGGTAGCTCCTGGCTGCTGGTGGGAGGTGTTCCTGGGGCTTTGCATACGTTACATTGTTGCCTCCCTTTCTGCCCTTGCTCTGCAG
Seq C2 exon
GAGGCCCAGTGAATATATTGCCACCATCTTGGAGCTCAGTGCCCTTGTAGAGAAAAGAAGCCAGCATATCCTCCAGCACATGGACTTTCTGTATTACCTCTCCCATGACGGGCGGCGCTTCCACAGGGCCTGCCGCCTGGTGCATGACTTCACAGACGCTGTCATCCGGGAGCGGCGTCGCACCCTCCCCACTCAGGGTATTGATGATTTTTTCAAAGACAAAGCCAAGTCCAAGACTTTGGATTTCATTGATGTGCTTCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204:ENST00000550308:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.1=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCACATCAGCCTCATGAC
R:
TTGCTCAGCAGAAGCACATCA
Band lengths:
342-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains