HsaINT1010528 @ hg38
Intron Retention
Gene
ENSG00000186160 | CYP4Z1
Description
cytochrome P450 family 4 subfamily Z member 1 [Source:HGNC Symbol;Acc:HGNC:20583]
Coordinates
chr1:47116650-47118319:+
Coord C1 exon
chr1:47116650-47116732
Coord A exon
chr1:47116733-47117765
Coord C2 exon
chr1:47117766-47118319
Length
1033 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTCTTTCTTGGTATCCCCAGGAA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTCTTTAACCCCTTGAGATTCTCCAGGGAAAATTCTGAAAAAATACATCCCTATGCCTTCATACCATTCTCAGCTGGATTAAG
Seq A exon
GTAAAGACTCAAGCTGGTGAACTTGATGGAAATGTGTAATAGTGCTTACCTGACAAGTGCTTCTTCCCTTCAGGCCCTCAGTTAGCTGACACTGCTGTTGCTCCCCATTATTTTACCTGGCTTGTCTTCTCTTGTGACCAGTGCATTTAGTTGGTACCCTTTTGAGCCCCCAAAGGGACCGGTTAATGTTACAAAGAACAACTCTGGTCCTTGGCATATGGGTGTGAATTGATGAAGGCCATCCTCATGACAGGCCCAAAGACTACACTTAAACTTGCAATGGACAAGCATTGGGAATGCCATCTTGTTATAGGAACAAGGCAACATTGGCACCTCCCAGCTCTTGTTCCTACAGAGAGCAATGTTGTTCTAAAGTCCAAGTTTCCCTTTGGTTTGGTATGAGAGACACCCGATTTACCAAATGACAACACAATCCACTGAGTATGCCAGGTTATTGTTCTTATGCCTAAGGCTTCAACTGCACAGCCTCTAAATAATAGTAAGAAGTAGCTTTTCCTTATCATGATATAAGGAAGGTTTTCAAGTTACGTGGACCTTGCAGAATCAAATGTTGATAGAACTCACTACCACTTATTTGTAAGATGGGCCCCAAAATAATAGAGCCACAGTTTGCAGGTCTTGACATTAATGGACTTTCTGATCGGGGCTTACTTAACTTAAAATAAAACATTTGCTGGATTCTGCCACATTGGAATTTGTTTAAAACATGGATCTTGGCTGGGTGCGGTGGCTCTTACCTGTAATCCCAGCACTTTCGGAGGCCAAGGTAGGCGGATTACTTGAGATCAGGAATTTGAGACCAGCCTGGCCAACATGGTAAAACCCTGTCTCTACCAAAAATACAAAAATATTAGCTGGGCATCATGGTGAGCACCTGTAATCCAGCAGGATGACAGAAAAAAAAATGGATCTTGTTTCCCTACAAAAGTCGTCATATATAAAAAGATTGGCGTATGTTGTTAATAATATATAAATTCATTAGATGCCATGTTTTCTTTCTTGGTATCCCCAG
Seq C2 exon
GAACTGCATTGGGCAGCATTTTGCCATAATTGAGTGTAAAGTGGCAGTGGCATTAACTCTGCTCCGCTTCAAGCTGGCTCCAGACCACTCAAGGCCTCCCCAGCCTGTTCGTCAAGTTGTCCTCAAGTCCAAGAATGGAATCCATGTGTTTGCAAAAAAAGTTTGCTAATTTTAAGTCCTTTCGTATAAGAATTAATGAGACAATTTTCCTACCAAAGGAAGAACAAAAGGATAAATATAATACAAAATATATGTATATGGTTGTTTGACAAATTATATAACTTAGGATACTTCTGACTGGTTTTGACATCCATTAACAGTAATTTTAATTTCTTTGCTGTATCTGGTGAAACCCACAAAAACACCTGAAAAAACTCAAGCTGACTTCCACTGCGAAGGGAAATTATTGGTTTGTGTAACTAGTGGTAGAGTGGCTTTCAAGCATAGTTTGATCAAAACTCCACTCAGTATCTGCATTACTTTTATCTCTGCAAATATCTGCATGATAGCTTTATTCTCAGTTATCTTTCCCCATAATAAAAAATATCTGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186160:ENST00000334194:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCATACCATTCTCAGCTGG
R:
TGGATGTCAAAACCAGTCAGAAGT
Band lengths:
342-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains