HsaINT1014034 @ hg38
Intron Retention
Gene
ENSG00000152254 | G6PC2
Description
glucose-6-phosphatase catalytic subunit 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr2:168902445-168904616:+
Coord C1 exon
chr2:168902445-168902554
Coord A exon
chr2:168902555-168904504
Coord C2 exon
chr2:168904505-168904616
Length
1950 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CGGACACTTTGTTGTTGCAGGAA
3' ss Score
8
Exon sequences
Seq C1 exon
GATATTATTTGGTCATCGACCTTACTGGTGGGTCCAAGAAACTCAGATTTACCCAAATCACTCAAGTCCATGCCTTGAACAGTTCCCTACTACATGTGAAACAGGTCCAG
Seq A exon
GTAAGCTATTACAGCAGGCTCCAGTTACTGAAGATCTTCCAATAGAGAATCATTACACAGGGTTATCATCTAGGAACTGATATTATATAGGGTAGTAAAGAAAATCTCATGAGTGAGGATGCTAAAACTTCATAACAATCAAAATTACTAATGAGGAAGCAAAGCAAAAAAAATACTCAAATTCCATTTTGTTATTTATGAAAGGGTAGATTGGGAGAAAACTCCCCCAGTGATTAAATATTTGGTGTTTACTTTTCAGAAGAATATAATGACTTGATACTAAAACAAGAAACAGTTAACTAGAACAAATTCTCAAGGAACTAGACTAAGATCTTAGAAATGTTGGTTAATCTGCTGCTAAGCAACTTTCAAAGTTACTATAGGTCTTCCGAGTATCTCACGAATGAGGGAGGAGTAGACAAGTCTTCTGTAAGAAAGGTAAGGACTTCTCAATGTTACTATAGCCAGTAAAGACTATTTCTAACCCTAGAACAATCTCTTTAAAACATATTTTTTCTCTGTACACAAGTAGGCTTCTTGGGCCACTTCTTTTTTATTCTAGGTAAGATTCTGTATGAGTATAAAATCTTTATTGTGATAGTTGATTCTAAGACTGTTTTAAAAAGTTTTTTGAAACATATATTTAAAAATTACATTTTAATTTATAAGAATGTGTTATATTGTACCTCATCATTTTACATAGCATAACATTCTCGCCAGTTGACATCCTTCGAAACTAACTTTGAGTAAAGGGTAGTAGAGAATGTGTAAATTCTTAATGAGTGTTCTGAATATGTCTTTTTTGTTCCCATAGAAGTATACATACATCTGTTATATCGCTTATTACACTAAATGATATTAACTAATTCTTTATATATCCGATTGCCTAGACTGGGTGTTCCATCAGGGGAGGGATGATGCATAGTTTATCTTTGTGAAACCAAAGTGTGATAAATGGATGAATGGTTGGATGGGTAACATTTGAGACCACCGAAATGTTATCGTGGTCAATTCCAGTCCTTTCCGGCATGTGTTCCACCTTATAAGACATTTTCTGGAAAGAGAGAGAGAGAAAAGAAAGAAAGACTGCATCTCTCGGGGAGATTTACAATTTTTTAAGGCATAGTTTTTAAAAGGCTCTGAAAATTCCTGCAGATAAGAAATAGGTCTGTCTTTGTTTAACAAATAAGAGACTGGTATTTAATTTGAATGAACTACCAGGTGAAAAATCGAGGAGGACATTTAAGGAAACTAATAAAAAATTCAGTAGCATGGAAAAGGCATTCTGGAAGTAGAAAGGCTTTTTCTGCTAGGATTAATGCCGTCTTTATAGCTTCTCCTCATCCTCTGTTTTAAAACAAAGATTCTCACTGCAGTGGCCACAAGATAGGCATAGAAGTAGCTGCTAGTACACAGCAGTCATTTGTAAGTCAATCAGCAAATCACTGGCATAGCAATGATATCCTTTAGAGTTTGACTTCTCAGCCCAAGGAAAATAAGCCAACTGAAGATCCAATACAAGCATTAGGGTGGTGCAAAAGTAATTGCGGTTTTTGCCATTACTTTCAATGGCAAAAACCGCAATTACTCTTGCATTAACCTAATACTTTTGCTTGTCAATTAAAAACAACCAAATATTGAAGAATGAGTAGGGCTGTGGCAGATTTGGGTGCAACTGCCTGAGTTCTTAATTAGCCTTGAGTATATTGATTTCTGGAATTCAATGAACCTGAAAATCTGGGAAAAAAATTTTTTGAGACAGTGTTTCTCAGGCTCAATTTAACTCAATTTTTCTTATTTCTACCCACTTCTAAACATTACATATAGCCTGTGTCTTGTCTTTTTTTCTGAGTTACTCATAATTTTCATGGGGAATATGCTATTCTATTATTCATTTCTGATCTTGATAGTTAACCACTTTTCAAATGGACGGACACTTTGTTGTTGCAG
Seq C2 exon
GAAGTCCATCTGGCCATGCAATGGGCGCATCCTGTGTCTGGTATGTCATGGTAACCGCTGCCCTGAGCCACACTGTCTGTGGGATGGATAAGTTCTCTATCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152254:ENST00000375363:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
NA
C2:
PF0156916=PAP2=PD(24.7=63.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGGTCCAAGAAACTCA
R:
CTGTGCAGAGTGATAGAGAACT
Band lengths:
198-2148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains