MmuINT1010637 @ mm10
Intron Retention
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69220783-69223043:+
Coord C1 exon
chr2:69220783-69220892
Coord A exon
chr2:69220893-69222931
Coord C2 exon
chr2:69222932-69223043
Length
2039 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACAAATGATGCTCATTGCAGGAA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GATATTGTTTGGCCATCGTCCTTACTGGTGGATACAAGAAACTGAGATTTATCCAAATCATTCAAGCCCATGTCTTGAGCAGTTTCCTACTACGTGTGAAACAGGCCCAG
Seq A exon
GTAAGCAGTTAAAGAAGCCTCACTTTACTGAAGGGAGTCACGATTAGCATCCTATAATCGTATGATATCTAGGATCTCAAGGTAAATGTCATGGGTAAGGATGCTTAAAGTGTATTGTAAAAATTGCTACTTTGAGGAAGGAAAGAAATTTTATGAATTACCAAATTCTATATTGTTACTTGTGAAAGATTAGGTGAGAAGAACACTTCCCAAATCATTTTATACTTGGGTATTTATTGTTTTGGAGAGATATAATGGTTGGGTATGAAAACAAACAAACAAACAAACAAAAAAAAAACCAAGAAGCTAGAACAAATTCTCCAAGAACTACATTAGGGTTCTAGAAACATTGATTTGTCTGCTGCTCAGCAGCTTCATGGCCCTGGCTCTTCTGAGAATCTCACAAATAAGGAAGAGACAGATGTCTTATAAGAAAGGTGAAGACTTCCTTGTACTCCCGCTGCCAGAACACATGGCCGCTAACATTCTTTTTCACTCTTTATTGTTCTTTATTGTGTACTATGTTAGTAGAGCTTCCTAGTCCTACTAACTTTTCAACTTAGAAGACCCTGTGTATTAAGTATAACATCTATATTGTAGAAGTCAACTTTAAGAGAGTAAAAAGTTCATGTATATTCATATATATGGGACGATGCTATTGCTTTAGCCTATGTGAAAGAGTTGTCATGTGTTACGTTGTAGTTGTAAAATTGGTGCCATTAGACAGTCCTTTGAAACAAACCTTAAATGTATGAGCTCCTAATGAATTTTCTGAATATCTTCCTTTGCTTCCATAAAAGTATACATACATCTTTAACAGTATTTATAATATCACAGTTAATTCTTTAAATATCTGGCAGCTCAGACTGTATGTCCTATTAGCCAAGGATTAAATGTATTTCTTATTTATATAAGTAGGTGGGTGGATCAATGGAAAACTGGGGAAGTGGCTGAAATGCTCATTTGCTTTATCCTAAAACTTTGTGAAATGTTTTTCACAGGGTATGGAATGAGAGAGAAAGAATTCCTACAGTAAATTTTATGTTTAACAAAGGGGGGGGGAGGCGCTGGCCCTTTGTTTTCCAAGATAATCTGGTATTTAACCTGGGTGACTTTCTACTAGGTGAAAAGTTATGTGCCATGTCTAAGTGGTTAAAAATAGAACTAACAGTACAGGAAAGGCATCCATTCTGGCACTAGGAAAGGCCTGAGAGTGGGTGGGTTTTGTCAAGATTCGCACCCCCTTTAGTGTCTTTGTAGATTTGAATTCTCCATTGTTTGGCAAAGCTTCTCACTGCAGTGGTCATCAGATGCACATTCTGGGTTCCGAATACACACAGCAGTCGTTTGTAAGTCAATCAGTAAGCCACAGGCAGAACAATGGCAGCCTGGCAGCTTAAGGAAAAATACATTGATTCAAGATCCAGGATAAGCACTTCAATTTTCTTGTCAATTGAAAACAACGTAATGAAGAATACAATTGTGTTATATATGGGCACAACTACCCACATTCTTAAATCACTGTACTGAGTATGTTGATATGCAAAATTCAGTCAGCTTGAAACTCTCTGGGAGAAGTGTGTGTGTGTGTGTGTCTGAGAGAGAGAGAGAGAGAGCATTCTCATTAAAGAAAGTTAGGTAGCATTACATAGAGTTATGGCTGATTATGTACATTGTAAGTTCATGGTAATCAGAATTTTGCATGGCCCCATTATATCACGATGGAATCGTCTGAGGAAATCACACTTTAACTCTTACCATTATTATCCATGTTATAAATGATCAAGAGTGGGACACTCTGGGGACCAAGAGGAAAAATAGATATTTCTAGCAATTTTCACTCTGTTTCTTCCTTTTTTTTTTTTTTAAGTGTTTTTGAAATAGTGAACTTGAGTCTCAAACGGACTCAGTTTGTCTTATTTTTATCTACTTCTATGCAGTACGTATAACCTATGGGTTTGTGACAAATACGCAATCCTAGTGTCTCATATGTGATCCTGATAATTAATCACCTTTTGAACAAATGATGCTCATTGCAG
Seq C2 exon
GAAGTCCATCTGGCCACGCAATGGGCTCATCGTGCGTCTGGTATGTCATGGTAACAGCTGCCCTAAGCTACACCATCAGCCGGATGGAGGAGTCCTCTGTCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232:ENSMUST00000005364:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.3=100)
A:
NA
C2:
PF0156916=PAP2=PD(32.2=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types