BtaINT0064748 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004241 | G6PC2
Description
Bos taurus glucose-6-phosphatase, catalytic, 2 (G6PC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192046]
Coordinates
chr2:27278160-27280504:-
Coord C1 exon
chr2:27280395-27280504
Coord A exon
chr2:27278272-27280394
Coord C2 exon
chr2:27278160-27278271
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTGCCACTTTCTTGTTGCAGGAA
3' ss Score
10.68
Exon sequences
Seq C1 exon
GATATTATTTGGTCATCGGCCTTACTGGTGGGTCCAAGAAACTCAGATTTACCCAAATCACTCAAGTCCATGCCTTGAACAGTTCCCCACTACATGCGAAACAGGTCCAG
Seq A exon
GTAAGCTGTTAAAGCAGCCTCAGGTTACTAAAGATATTCCAACAGATAGCCATTGTACATGATTATCACCTAATAACTGTACAATATCATAGAGGGTTTTAAAGAAAATGGCATGGGTGAGGATGCTAAAAGTTCATAAACAAAAATTGCTAGTGAAAAGGGTAAAACTTTTATGAGTAAGAAAATTTCATTTTTAAAAAATTTGTAAAAGGATAAGTTAAAAGAATATTCCCCAAATGATTTTATTCTTGGCATTTTTTTTTTTTTGAAAGGAGGTCATGGTCTGATATAGAAACAAACAAAAGACAATTAACTAGAACACATTTTTTAAAAACTATATTAAAATACTGGAAATGCTGATTTATCTGCTGCTGTGCACCTTTCAAAGTTATTGTAGATCTGAGAATCACATAAATGAGACAACAGACAGGGTTTCTGTAAGAAAGGTAAGGACTTCCTGGTATTACTATTGCCTGCCGAAATTCTCTTTCATCGTAGAGTTATTTCTTTCCACTTTGCTTTTTCTCTTGTGTATACAGTACCTAAGTAGACTTCTGGGTCCACTCTCTCATAAGTAAGATTTTGTATGAGTATAAAATCTTTACTATGAGAGTTGAATTTAAGATTATAAAAAGTTTTAAATATATATATATATAAGGTAAATTGCATATTGTTTTACTTTGTAAGATTGTGTTATATTGTACCTCCACACAGTTTTGTTACATAGCCTCAAATTATTGGCATTTGACATCCTGAGACTAACCTTGAATACAGTGAATGTGTAAGTTCCTAATAAATTTTTGGAATATCTTTTTTTTTTTTTACTACCAAAAAAGTAGGCATCCATCTGTTATAGTACTTATCACTCTATAGTATTATTAATATTATTATTAATACTACTAATATTATATTATTATTATAGTATTATTGGTATTAGTAGTAGTAGTAGTAGTAGTTATTTAATATCTGACTCCTCCAATAGACTGTGCATTCCATCATGTCAGGGATGCTATGTATTTTATCTTTGTGAAAACAATGCAGGATGGATGGATGGATGGATAGTATCTGGGACAATTGAAATGCTGCTGCTGCTGCTAAGTCGCTTCAGTTGTGTCCAACTCTGTGTGACTCCATAGACGGCAGCCCATCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTCAATTGAAATGCTACTTTGGTTTATCCCAGAACTTCCCAGCACATGCTCTGTCTTATGAGACATTTTCTGGAAAAGAAAAAAAGAAATACTACATTTTACATTCACTCCTTGAAGTTTTCCAATACATGAAACATATAAAAAGCCCTGATAATTTCTGTTTAAGAAATCAATTTGAAAGAAAGAGATCCATAAGTCATAGATTTGTCTTTATTTAAACTGGTGTTTTTCAAAAAGAGACTCAATGAATTAAGCTCAATGAATCTCCACTTGGTAAAAACTCAAGGAGTACATCAAAACAAAGTGATTTTTTAAAAAAAGATCTAGTGACATGGGAAAGACATTCTGGGAGTAGAAAGGCTTCCTGTCTGCAGATTTATTCTGCCAGGATTGATGCCACTTTGTAGCTTCCCTTTTCCATTTAATGACAAAGACTCCTAGTGCAGCAACCAGTCACAAGATGGGCATGGGGCTAGCTAGTACATAGCAGTTAGTTGGGAAATCAGACACAGCAGTGATAGCTTTAATATGTTTGACTTTTCAGCCCAAAGAAAATAAGCTGATTCAAGATTCAATCCAAGTACTTCAATTTTGTCATCAGTTAAAAACAATTAGATATGAAGAATGACTAAGGATGTGGCAGATTTTTTGATGCAACAGCCCGAGTTCTTAATTAGACTTGAACATTTTGATTTCTGGACTTCAATGAACTTGAATAACCTGGGGAAATTTTTTGAAATGGTGTTTGACTCAATTTTATTTATTTCTACCCATTACTAAACAGTACATACAGCCTATGTCCTATGGCTTTTTTCTGAGTTATTTGTAATATTCATGGCTAATATGCTATTCTATTGTCCATTTCTGATAGTTGTACTCTATTAACCACCTTTCAAATGGATTGCCACTTTCTTGTTGCAG
Seq C2 exon
GAAGTCCATCTGGCCATGCGATGGGTTCATCATGTGTCTGGTATGTCATGGTGACAGCGGCCCTGAGCCACACCGTCAGTCAGATGGATAAGTCTTTTATCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004241:ENSBTAT00000005552:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.9=100)
A:
NA
C2:
PF0156916=PAP2=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]