MmuINT0066813 @ mm9
Intron Retention
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69058840-69061100:+
Coord C1 exon
chr2:69058840-69058949
Coord A exon
chr2:69058950-69060988
Coord C2 exon
chr2:69060989-69061100
Length
2039 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACAAATGATGCTCATTGCAGGAA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GATATTGTTTGGCCATCGTCCTTACTGGTGGATACAAGAAACTGAGATTTATCCAAATCATTCAAGCCCATGTCTTGAGCAGTTTCCTACTACGTGTGAAACAGGCCCAG
Seq A exon
GTAAGCAGTTAAAGAAGCCTCACTTTACTGAAGGGAGTCACGATTAGCATCCTATAATCGTATGATATCTAGGATCTCAAGGTAAATGTCATGGGTAAGGATGCTTAAAGTGTATTGTAAAAATTGCTACTTTGAGGAAGGAAAGAAATTTTATGAATTACCAAATTCTATATTGTTACTTGTGAAAGATTAGGTGAGAAGAACACTTCCCAAATCATTTTATACTTGGGTATTTATTGTTTTGGAGAGATATAATGGTTGGGTATGAAAACAAACAAACAAACAAACAAAAAAAAAACCAAGAAGCTAGAACAAATTCTCCAAGAACTACATTAGGGTTCTAGAAACATTGATTTGTCTGCTGCTCAGCAGCTTCATGGCCCTGGCTCTTCTGAGAATCTCACAAATAAGGAAGAGACAGATGTCTTATAAGAAAGGTGAAGACTTCCTTGTACTCCCGCTGCCAGAACACATGGCCGCTAACATTCTTTTTCACTCTTTATTGTTCTTTATTGTGTACTATGTTAGTAGAGCTTCCTAGTCCTACTAACTTTTCAACTTAGAAGACCCTGTGTATTAAGTATAACATCTATATTGTAGAAGTCAACTTTAAGAGAGTAAAAAGTTCATGTATATTCATATATATGGGACGATGCTATTGCTTTAGCCTATGTGAAAGAGTTGTCATGTGTTACGTTGTAGTTGTAAAATTGGTGCCATTAGACAGTCCTTTGAAACAAACCTTAAATGTATGAGCTCCTAATGAATTTTCTGAATATCTTCCTTTGCTTCCATAAAAGTATACATACATCTTTAACAGTATTTATAATATCACAGTTAATTCTTTAAATATCTGGCAGCTCAGACTGTATGTCCTATTAGCCAAGGATTAAATGTATTTCTTATTTATATAAGTAGGTGGGTGGATCAATGGAAAACTGGGGAAGTGGCTGAAATGCTCATTTGCTTTATCCTAAAACTTTGTGAAATGTTTTTCACAGGGTATGGAATGAGAGAGAAAGAATTCCTACAGTAAATTTTATGTTTAACAAAGGGGGGGGGAGGCGCTGGCCCTTTGTTTTCCAAGATAATCTGGTATTTAACCTGGGTGACTTTCTACTAGGTGAAAAGTTATGTGCCATGTCTAAGTGGTTAAAAATAGAACTAACAGTACAGGAAAGGCATCCATTCTGGCACTAGGAAAGGCCTGAGAGTGGGTGGGTTTTGTCAAGATTCGCACCCCCTTTAGTGTCTTTGTAGATTTGAATTCTCCATTGTTTGGCAAAGCTTCTCACTGCAGTGGTCATCAGATGCACATTCTGGGTTCCGAATACACACAGCAGTCGTTTGTAAGTCAATCAGTAAGCCACAGGCAGAACAATGGCAGCCTGGCAGCTTAAGGAAAAATACATTGATTCAAGATCCAGGATAAGCACTTCAATTTTCTTGTCAATTGAAAACAACGTAATGAAGAATACAATTGTGTTATATATGGGCACAACTACCCACATTCTTAAATCACTGTACTGAGTATGTTGATATGCAAAATTCAGTCAGCTTGAAACTCTCTGGGAGAAGTGTGTGTGTGTGTGTGTCTGAGAGAGAGAGAGAGAGAGCATTCTCATTAAAGAAAGTTAGGTAGCATTACATAGAGTTATGGCTGATTATGTACATTGTAAGTTCATGGTAATCAGAATTTTGCATGGCCCCATTATATCACGATGGAATCGTCTGAGGAAATCACACTTTAACTCTTACCATTATTATCCATGTTATAAATGATCAAGAGTGGGACACTCTGGGGACCAAGAGGAAAAATAGATATTTCTAGCAATTTTCACTCTGTTTCTTCCTTTTTTTTTTTTTTAAGTGTTTTTGAAATAGTGAACTTGAGTCTCAAACGGACTCAGTTTGTCTTATTTTTATCTACTTCTATGCAGTACGTATAACCTATGGGTTTGTGACAAATACGCAATCCTAGTGTCTCATATGTGATCCTGATAATTAATCACCTTTTGAACAAATGATGCTCATTGCAG
Seq C2 exon
GAAGTCCATCTGGCCACGCAATGGGCTCATCGTGCGTCTGGTATGTCATGGTAACAGCTGCCCTAAGCTACACCATCAGCCGGATGGAGGAGTCCTCTGTCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232-G6pc2:NM_021331:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.3=100)
A:
NA
C2:
PF0156916=PAP2=FE(23.3=100),PF134911=DUF4117=PU(26.7=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: