GgaINT0049546 @ galGal3
Intron Retention
Gene
ENSGALG00000010899 | G6PC2
Description
NA
Coordinates
chr7:20386997-20388022:-
Coord C1 exon
chr7:20387913-20388022
Coord A exon
chr7:20387109-20387912
Coord C2 exon
chr7:20386997-20387108
Length
804 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AAACTTTTCGTATTTATTAGGGA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq A exon
GTAAGAAATGCTGGAGATTGCACTGAAACATTTAATACATATGGTGGCTTTAGGGGTAACTAGAGGGTGTGATTTACAATTATTTTGTATGGTATTAAAAATATGAAGTAGCCTATGGATATGTAACTTCTACATTATGTGCTATAACCCTCGGAGGAGCTCTAGTGTTTATAACAGCAAGGTAGCAGAATAACAGCTCAAGTTTCAGCATGAGTATTTGTTGAATTAGGCCTCTGGCTGCTTAGATTTACAGAGGTGTCTTCAACTCCAATTAGCTCAGGTATGCCATAACTTGATGTATATGAAAAAAATATAACAGTTTGGCACATTCCCTGTAAGCGTGTTGCTGCAGAAAAAATAAATATTACTCAAACTTGTTATCTCATGTTCTTTATATTGCAATGACTCTTTGGGGAAAAATAATATTGAGCAACTCGCGCTGTAAAAATATGGCAGTTTTGTAAAGACATTAGTATTCAACTAGCAGCTAAATGCTCTATTTTTTAACCACAGTCCAAGTCTAAGTCATGGAAAAATGCTATGCTTTCTGATCAAGACACTGGCTCACGCTGGTATAAGATGGGTAAGCTGTTACCTGCTTGATTACTGGCAAATATTCTGGATTCCAAATAGATGAATCTGCTAAAAAAATTATATTGAAAAGAACAAACTTTGAGAAGTAGTTAATATTCTTTCTGCCCTTTTTTTCCTAAATGATTAGATGCCTGAGTAACTGCCAATAGACATTTTCTGTATGCCTGCTATAGCCATCGTTTTTAAGCTTAAACTTTTCGTATTTATTAG
Seq C2 exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899:ENSGALT00000017723:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.8=100)
A:
NA
C2:
PF0156916=PAP2=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTATTTGGCCATCGTCCCT
R:
CTGTGAAGGGTAACTGCTGAT
Band lengths:
222-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]