HsaINT1017238 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128890343-128891087:-
Coord C1 exon
chr7:128890905-128891087
Coord A exon
chr7:128890514-128890904
Coord C2 exon
chr7:128890343-128890513
Length
391 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACG
5' ss Score
7.77
3' ss Seq
GCCCCTGCCCTTCTCCCCAGGCT
3' ss Score
10.98
Exon sequences
Seq C1 exon
CCCCCGCCGGCTGCCCACGGCCCGGCGCGGCCCACGCCCGCCACCAGGAGTACTTCTCCCCGCCCGGCGATCCCTGCCGCCGCTGCCTCTGCCTCGACGGCTCCGTGTCCTGCCAGCGGCTGCCCTGCCCGCCCGCGCCCTGCGCGCACCCGCGCCAGGGGCCTTGCTGCCCCTCCTGCGACG
Seq A exon
GTAACGCCCTGGCGGTGCCCCTCCCGGCCACCCGCGTCCTGCCGCCCCGCCCCGCCCCGGAGCGCCCTGCCCAGTCCCCTTCCTCCAGGCCCGCTCCGCCCACGTCGGGGATCTTGTTAGGAATGTAGTGTCCGGTCAGCATGGCCTGGGAGCCAGCCGGCACGGCCCTCCATCCCCCACGGCCCCCAGCCCCCCACGACACCCATCCTCCACGGACCTCAGCCTCCACGGAGCCCACGGCCTCCCCGCCCTCACGGACCCCCAGCCCCCACGACCTCCAGCCCCCACGGCCCCCACGACACCCGTCCTCCACGCCCCTCAACCCCACGACCACCAAGTCCCCACAGCCCTCTAGTCCCCACGGCCCCCCAGCCCCTGCCCTTCTCCCCAG
Seq C2 exon
GCTGCCTGTACCAGGGGAAGGAGTTTGCCAGCGGGGAGCGCTTCCCATCGCCCACTGCTGCCTGCCACCTCTGCCTTTGCTGGGAGGGCAGCGTGAGCTGCGAGCCCAAGGCATGTGCCCCTGCACTGTGCCCCTTCCCTGCCAGGGGCGACTGCTGCCCTGACTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=86.2)
A:
NA
C2:
PF0009313=VWC=WD(100=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCACCAGGAGTACTTC
R:
CATCACAGTCAGGGCAGCAG
Band lengths:
318-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains