BtaINT0111672 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2009571-2010275:-
Coord C1 exon
chr16:2010108-2010275
Coord A exon
chr16:2009683-2010107
Coord C2 exon
chr16:2009571-2009682
Length
425 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CCCCATTTCATCTCCCTTAGAGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GATCTGCTTCCCTGTGCAGCTGAACCGGCTGCCTCGGGAGACCCTGCTGTGTGCCACCCTCTACGCTCTGCCCGTGCCCCCGCCGGGGAGCTCCTCGGAGGCCAACAAGCAGCGGCGGGTGCCCGAAGCCCTGGGCTGGGTCACTGCTCCGCTCTTCAACTTCAGGCA
Seq A exon
GTATGTGGGCCCAGGGCACCAGCTTGGCCTTGGGTGGAGGAGGGCCTAGGCAGAGGTGTGACCAAGGAAGCTACTGGGCAGGACTCATGGCCCAGGACTGGTGGGAAGGGGCAGGGAAATGCGTGCTCATGTAATGCCATCTGGTCTTATCATTGGAAGGATCTCAGAGGTCCTCCAGTCCCCCTCTCTAGCTCATGAAGGCATCCACCCCAGGTGTGGTGAGCTTAGAAAGGCTTCCTGGAGAGAGTGGGATTTTTTTAGGGCTTGAAAGAAGGAACAGGTGGTGGTCTAGGGAGAGAATGAGAGAGAAGAGTTGGGCAGTGGATTCGAGCAGAAAAGGCAGATTTTTGGATGGGGAAGCAAGAGGAAAACCATGTCCTTAGCCACTGGGTTTGTTGGCTCACCCCCCATTTCATCTCCCTTAG
Seq C2 exon
AGTCCTGACCTGTGGCCGGAAGCTTCTGGGCTTATGGCCAGCAACACAGGAAAGTCCCAGTGCCCGCTGGAGTGCACCTAATTTCCATCAGCCAGATAGTGTGATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(39.7=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTTCCCTGTGCAGC
R:
TGCAGGATCACACTATCTGGC
Band lengths:
279-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development