HsaINT0124949 @ hg38
Intron Retention
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204449185-204450017:-
Coord C1 exon
chr1:204449850-204450017
Coord A exon
chr1:204449297-204449849
Coord C2 exon
chr1:204449185-204449296
Length
553 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CCACTCTCCCTCCTTCTTAGGGT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GATCTGCTTCCCAGTGCAGGTGAACCGGCTGCCTCGGGAGACACTGCTGTGTGCCACTCTCTATGCTCTGCCCATCCCCCCACCGGGGAGCTCCTCAGAGGCCAATAAGCAGCGGCGGGTGCCTGAAGCCCTGGGCTGGGTCACTACCCCACTCTTCAACTTCAGGCA
Seq A exon
GTATGTGAGCCCCAGGGTACAGCTTCTTGGCCTTGGAAGGGGAGGAGGGGGACAGAGAAAGGGGCCTGGCTGCTGCACTGGCCAGTGCGCCTTGGGAGAGTTGGCCATGTGGGGCTCACTGGTGAAGTCCAGAGGATCCCCAAGCACAGAACTGGTGACCAGGACTATTGATGTAACCAAGAGCCACTGAGCGGTTCTGGTGGCACAGGACCATGTTAAGGATACATGGAAAAGCAATGCTTGGGTAATAGATCATCTGGTCTTGTCATTGGAAGAACCTTAGAGGTCATCTAGCCCAGCCTCCCCACCTCATGAAGGCATCCCTGCCACCAGGTCATCCAGACCAGGGTGTGGTTAGCTCACAAGTCCTCTTGGAGGGCGTAAGCTTTTACAGGACTTGGGAGAAGGAAGAGGCTATGGTCCACGGTGAGAATGAGAGGGGAGTTGGATGATGGCTTCAAACAGAAAAGGCAGATTTTTGGATTGGGGGAGCAGTAGAAATATTCTCTGCTTAGCCACTTTAGCAGCTCTTCCCACTCTCCCTCCTTCTTAG
Seq C2 exon
GGTCCTGACCTGTGGCCGGAAGCTTCTGGGTTTGTGGCCAGCAACACAGGAAAATCCCAGCGCCCGTTGGAGTGCACCTAATTTCCACCAGCCAGACAGTGTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056:ENST00000367187:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(39.7=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTTCCCAGTGCAGG
R:
CTGCAGGATGACACTGTCTGG
Band lengths:
280-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development