RnoINT0111265 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49888163-49888970:+
Coord C1 exon
chr13:49888163-49888330
Coord A exon
chr13:49888331-49888858
Coord C2 exon
chr13:49888859-49888970
Length
528 bp
Sequences
Splice sites
5' ss Seq
GCAGTACGT
5' ss Score
6.49
3' ss Seq
CTACCCTCCTTCTACCTTAGAGT
3' ss Score
9.56
Exon sequences
Seq C1 exon
GATCTGCTTTCCCGTGCAGGTGAACAGGCTGCCTCGGGAGACCCTGCTGTGTGCCACACTCTATGCCCTGCCCATTCCCCCTCCCGGGAGTTCCTCCGAAGCCAATAAGCAGAAGCGGGTGCCTGAAGCTCTGGGTTGGGTCACTACCCCCCTCTTCAACTTCAGGCA
Seq A exon
GTACGTGAGCTCCGGGGAAGCAGCTTCTGGCCTCGGAAGGGAACGAGGGGGATGGAGATAAAGCCTGGTTGTTGGACGTGGTACTCCCTGAGAAGGATTGGCCACACAGAGCCCACTGTGAAACCCAGAGGCCTCTGTGTCAGTAGAGAGGTCAATACACGGAGCTGGTGGCCAGGACTATTGATGGAACCTGGTAGGTGGGGGAGGGGCATGGGAAAGCACCGTCCCTGTATCAAGTCATCCGGTCCTGTCACCAGAAGGACTTCAGAGGTCATCTACCCAGGCCTGTCTACCTCACGGAGATGTCCCTGCCAAAGGGTCATCCTGGTTCAGGGAGTGGTGAGCTCAGAGAGGCTTTCTGCAACAGGAGCCTTCCTAGAACTTGAAGTAAGACCCGTGGTCTGTGGGGATGATCCAAGGAAGTGGGGAAGAAGTTTTGCCTAGGAAAGGTTTGGGATAAAAGAGCAGAAGAGAAACCCACAGCCTAGGCACTGGTTGTTGGCTCATCCTACCCTCCTTCTACCTTAG
Seq C2 exon
AGTCTTGACCTGTGGCCGAAAGCTTCTGGGCTTGTGGCCAGCAACACAGGAGAACTCCAGTGCCCGTTGGAGTGCACCAAATTTCCACCAGCCAGACAGTGTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(39.7=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTTTCCCGTGCAGG
R:
CTGCAGGATGACACTGTCTGG
Band lengths:
280-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]