GgaINT0141660 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1590959-1591387:-
Coord C1 exon
chr26:1591220-1591387
Coord A exon
chr26:1591071-1591219
Coord C2 exon
chr26:1590959-1591070
Length
149 bp
Sequences
Splice sites
5' ss Seq
GCAGTGCGT
5' ss Score
4.08
3' ss Seq
CCCCCCCCTTTCTCCTCCAGGGT
3' ss Score
12.92
Exon sequences
Seq C1 exon
GATCTGCTTCCCCGTCCAGGTGAACCGACTGCCGCGGGAGACGCTGCTCAGCGTCACGCTCTTCGCCGTGCCCGTCCCCCCCCCGGGGAGCTCCTCCGACACCAACAAGCAGCGGCGGGTCCCTGAGGCTCTGGGCTGGGTCACCACTCCGCTCTTCAACTTCAGGCA
Seq A exon
GTGCGTAGGGCGTCCAACCACCACGGGCACCCCAGGGTGGGCCGTGAGGGTCCCCCAGGGCTCAGTGTGGGGACGCAGCATCGTTGCAGCGGTGCCACCCCAACCCCAGGGGAGCAGCCCCACAAACAGCCCCCCCCTTTCTCCTCCAG
Seq C2 exon
GGTCCTGACCTGCGGGAGAAAGCTTTTGGGCTTGTGGCCGGCGACCCAGGACAACTCCAGAGCCAGATCGAGTGCCCCCAACTTCAACCAGCCCGACAGCGTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(39.7=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTTCCCCGTCCAGG
R:
CACTCGATCTGGCTCTGGAGT
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]