HsaINT1023163 @ hg38
Intron Retention
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21740154-21743630:+
Coord C1 exon
chr10:21740154-21740236
Coord A exon
chr10:21740237-21741938
Coord C2 exon
chr10:21741939-21743630
Length
1702 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GCTCTTTTGTTTACCTGCAGAGA
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTACACAGGCACCCCCACTTCACACAGCTACCACCAACCCATTTCTCACCATCCATGGAGATAATGCAAGTCAGAAAGTAGCA
Seq A exon
GTAAGTATATTTTCCTTACTACATCTAATGAAACAAGAACTGTATTGATTAATCGGAGATGATCATTTTCCAGCCTGGTTTTGTTCCCCTGATCATTTCTTCTTAAAACCAGTTGCTTTTAGCAGATGGATATTATAGGCAAAGGATCTAAGCCAATTTATACGTCCCCTAAGTATATCAGTTTGAATTTGCACATTAGGTTTGAAGGCTGTTTTGTAATTCAGCAATTTTCAAGATGACAAAGTTAGCAAGTCATATGGGACAATCAAATCAAAAGACAATAGTTGGTGCTTTCTGAGAAGCTTTGTTTATAGAACCAGTCTATATATCTTGGAAATATTTTTATTTTACTCCAAAGTGCTTTTTACACATTAAGTATATTTATTACCAAGATGAATATATACATTTTAGGGCACACAATCCAATAATTCTACCAGATTAGAGGGAGTAAATCACAGTCACATCTGTAATGGAATTCAAATTTTTAGTTATTAATTTCATGTAAGTGATGGCATCGTACCCTTTCAATGTGAAAGTTAAATTAAAAATGGATGCAGGAACAGTATTCTACACATACAGTAGAACCCATTTTAAGGCCGTTTCGATTAATTCTCCCCTTCAATTAGGTCTACTTTACTGGAGTATAAATGTTTCCCCTAAATTCCAGTTCAGGGCAGAACCCTGTTAGAGGAAGGCTATGGGGATGTAGAATGGAGACTGGACATCAGGAAAAGGAAGAAGGGAGGGACTGAGGTGGGAGACTTGGCAAATGAGTGTTCAAAGTTGCAGTGTTTGCTGTTTCCCGTTACTTTGAAAGTTTTGTTTACTGTGCTTTTAGTCTTCAGAAACTTTAGTTTGTACTTAGTAACGAGAATTATTCAAAATAGAGGATTGTTTTTCATGAACTCTTCAGTGCTTTCTGTCTGCCCTCTTGTCTCGCCTACTTCCTGTCATCACACACCGCATTACCTCTCCAGTGTTCTGCTGACATGGACAGTTTTCAGTGATTCTGTATTGAGTTCTTTGGTAGTATTTTTTCCCCCCCAGTGTTTCACCAAGTGTTTTTCTTGTGTTAAGAAATGCACTAATTACAAACTTTTCCTAGGTTATACAATATGAAATGTATTTAATGGAAAATCACAGTAATTTAATGAGCTAATAGAGTGCTCATAATAGAGAACACAGTGCTGGGAGGTGCTGTTTGCTTAGTACCCTGCTATGTGCCAGGTGTCCTTGCAAGATACAGTGACATTTGTGATTTCAGTCTTTAATAATAGGCTGTAACTCCATTTTTTTTATAGATTAGTAAAAGGAAACGCAAAGAAAGCCCAAGGACAAATAGCAAATGTGGAATCACAGCCGATGACTTTCTTAGCCCATAAAAATTTCATTCTCTACAGTACCATGTTACTTCTGTGGAAAAGTTGATTTTGGAAGATGAATTCTGCATTCATTCTTTACAAGTTCTGTCCCTCAGATGGGCCCACCTCTTTGGTCTTTTTATACTGTTGAATTTAATGTTTTTAAAGTATTTACTAGTAAATTCATGTCTATATATTACGTTGCAAGTAGCCTTGCCAACTTGCAAGAAAAAAGGGAGTAACTTTCTATACCACATTTTATCTCAGTCACAGTTTCAAATTCGGAGAATATTATCAAAAGTTGATTTAGCTAACGCATCTGCTCTTTTGTTTACCTGCAG
Seq C2 exon
AGACTTAGTGATAAAACTGGGCCTGTAGCTCAAGAGAAAAGTTGACACCTGAGAAACATCTAGAAATTGCCTATCCTGCTGTTCTAGCACTTCATCTGGCTGCCTTTGCAGTCCTTTTACTACAGCTATGAAGAAACGCAACAAGAAACTCAATGCACAACAAAGGATTAATTGCTGCAAGGACATTCTTGTAAGGCTTTGATTAGTTTTCTTGTTGCTTTGTTGCACTGAAATGGAATTCCCATGCCCCTACCCCTTACCCCAGTTTTTTGAACATGGAAAGAAAATTTAATAACTTTTTAAAGTGACATAATTTACATGCAATATGTTTATCAACTCAAGAATTTAATATAGTTGGTACACAACTAGTTTTGTTTATAAATTGGAGATGCAAATAGCAAAACTAAATACTTGCTCCATTTACAAACTACTTGATTTTATTGTACAAGTTGAAATATGCTCTTTTGTTTGGGTTACAGTATGCTTGCTCTAAGTCAAATTCCAAGGAACTAATTTCTTCTCCTGGAGTTGCATTGATTCAGTATTACAAATATATAGCACATCACCTGGGACTTGGCAATCTTTGTTAAAAAAAAATTTCCTTTCTAATGGGATTTGGCCAATTTTGGTAATGAAGTTAGGATGGTAATGTCTGCATCTGCTAAAGGTAATTTTCTTTTGAGAATTGCTTTCTTTAGTGTTAAGACCTACTCATATTTTGAAGAAATCTTGAGTTAAGTGAGTTCTGAGGCTGCTGGGGGAACCAGATCAATTCAAAGCTAAATACTTCTTTCAGAAAGGGGCCACTGTGGAAAGTGCTGGTGGGGTTTGCCCTTGATCAAGTGCCTCCATTGTGCTGCAAGGGCTGTAGACAGCAGGGTGGGACAGTCAGTCCTCCGAGCAGCAGGAATCATCCCGTCACCTGCAGCCTTCCCATGCTTCCGCCTTTATTCAGAACTTTCTGTGCCACTGTAGATAGCTCAGGCAAAACTATTACCTGGGTATTTATCCACTAATGAGTCACAAGAAAAGGAGTGGATTTGGTAAGAATAGAGATTTGTTTTATTTAAACCACTTCCCATTACTGACCATTAAAAGCTCACCACTAGAGTTCCTGAAACAGGTGAAACCTGTATGACAGCCCTTCCACTTTGGGGAGCCACGCTTTTGATGTGACAGTACCGCAGAGTGATTCCCCCACTGAGGATGTCATCATCAAACTCTTCTTTGGTGTGTGAATTATTAGTGGAAAAGACCCAGCTGTAATTAGACCTCCACTGTGTACTTAGCTGGAAGAACATGTTAATTCTGCAATATGTTTCTTGGTTAAACATTGCACAGTTCTTACCTCATTTCTGTAAATAAAGTTTTGTGAATCTGTTTTGTATTGTGACAAATTCATAAGATAACATTGATATTTTGATTTGTAATATTTCTAATTGGTAGATTTAATTGAAAAGTAAAATTAATTTATTTTTATATGTTCAGGGGAATTTTAAAGTCAAATCTTTTGTAGATAATTTAAAAAATCAGTGTGGTTTATTTTACTTATTTAACCCACTGGTTGTTATTCTGTAACAGTTTGTATAAATGGTAAATTTTGAATGTGTTGTTATTTTACCTAGATGTAAAATTCCACATGTATTAAAATGTACAAAATGTTTTGTTAATAAAATTTAATAATGTTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403:ENST00000377072:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCCACTTCACACAGCTA
R:
AAACTGGGGTAAGGGGTAGGG
Band lengths:
342-2044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains