RnoINT0092930 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84977393-84979543:+
Coord C1 exon
chr17:84977393-84977590
Coord A exon
chr17:84977591-84979498
Coord C2 exon
chr17:84979499-84979543
Length
1908 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATTTTTGATTTGAACTGCAGAGA
3' ss Score
5.57
Exon sequences
Seq C1 exon
GAGCAGCACCAGGCCTTCCTGTACCAGCTGATGCAGCAGCAGCACCATCCCCCCGAGCTTCAGCAGATGCAGCTCCCAGGGCCCACGCAGATCCCCATCAACAACCTCCTGGCAGGCCCTCCGGCGCCCCCACTCCACACGGCGACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACAAGCCAGAAAGTCACA
Seq A exon
GTAAGTATGTTGTTGTATGTTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGACCTTGGAGGCAGGGTTCCCAGGGAGCCAGGGCGGGTGTTCCTATGAGTTTTCCTCGTGAGGATCAGTTGTTTTAGCAGCTGGATATATTGCAAGGAGAGTGTCCCTTAAGTATATTGATCCGAATTTGCATATAAGGTTCTAAGGCCATTTATAATATAGCATTTTCTAAAATGATTTGTTAGCAAGACGTATGAGACAGATTATTAATTCAAAACAGATCATTTTTCTTTAAAAAGACTTTAATTTGACTAGTTATAGAATTTTTCTCCATTTAATTCTATATGTTTTATTACCTTGTTCCAACTTACTTTTAAAATGGAGTTATATTTCTGATATGGTAAATACACAATTAGGGCAGGATTCCTAATGTTGTACCACTTGCCTTGAGAAAGTCGATTGCTGTGCTGGAGAGAGGCCCAGCGCTAACAGAGCATCCAAAGCACCTGAATTCGGTGTCTAGCACCCCACTGCCCCCAGCTCCAGGAAGCCCATTCCCACTTTCTGTAGGCACCTGTACACACACACACACACACACACACAATATAAGTGCTCCCAAAACCTAATTGCAGCTACAATTTTAAAATTTAAGGTTACTGACTTGATAATTTGTAAGTCATAGCATCTCACCCTTAAGGGGGTCAAGGTAAAGTTAGGTGTGGCTACAGGAACAGCCTGCACGTGGCTCACGTTTTCGGAAGGTGCCGCAGAGTAGAGCATGGAGACCTGGTGCTAGGAGCGGAGAGACAGGCAGGACCCGAGGACTGACGGCCGTTGCATGTCCCTTGCTTTGGTTTCTCTCGTTTTACTTTAACCTTCACTTAGTAATGTACACTGGCTCAAAGTCTGGGCTAACTGCCGAGTGCGCCTGCTTCCTGAGTGTGAGCGCCATCACCATGGGCATTGCCCCTTTCCCTGTCAGTGAGTCTGCGTTTATGTGGACATTTGATACAGTGTATCGTGCTTTTGCTCACGGATATTTTCCACATTAAAACTAGATTGTTAATGGAGGAACCACAGTGAAGCCTCATGGGGTGCAGTACGTGCCTCAGCTCTTGGGTGGCTAACGATGGAGGCTTGAGCCATATAGAGAGGCTCCATAGCCCTCCGCCTCTTTTTCCATATACCCCTCTGTCTTCCCTCCCCTTCCCCTCTCCTCCATCCCACCCCCCAACCTCCATCCCTGCTCCCTCAAGACAGGATCTCTGTACAGTCCTGGATGTCCGGGAGCTCACTGTGTAGACCAGGCTGGCCTTGAACTCATAGGACCGGTCTGTCTCTGGTCCCTCATGTTGGATTAAAAGACAGGTGCTACCACACCTTGCTGAGACCCAGTCTCAAACAAAACCAGCAGGAAGCTGGGTTGAGAGGGAAGTTAAGGCATCCCTGCTTGGGTACCAAGATCTGAGGAGTACAACGTCATAATGTGATTTCAGTTCTTAACATGGTCGGTGGAACCTCACTTACAATAGGCAAGAGCTAAGAGAGGTCCAAGCTCAGGGAACATGTACAATTGAGGGGCCAACTTAGGCTTTTTCCTAGTCCGTAAAAACTCAGTGCTGGCCGTAGCTGTGCCTCCTGTGGGAAGGTGGGTCTAGGAAGGTGACACTATATCCTTTCCTTGAAACCATAGCCAAGGATGGGCTCACCACCTCTGTGCCTTTCCCTGTGTCCAGTGTGGTGATGTGAAGTCCTTAGAAAATCCGTGTTCCCCATGCAGAGGAATAGCTGACTTGAGGAGAAATCACTGAATCAATGACGGTCGCAGTTAGAGGGGATTGTCTCGTCTTGGCCAACACTGGTTGAACTAATGCTTCTAATTTTTGATTTGAACTGCAG
Seq C2 exon
AGACTTAGTGATAAGACTGGGCCTGTAGCTCAAGAGAAAAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCACCAGGCCTTC
R:
TTTTCTCTTGAGCTACAGGCCC
Band lengths:
238-2146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]