MmuINT1023131 @ mm10
Intron Retention
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18208750-18210970:+
Coord C1 exon
chr2:18208750-18208947
Coord A exon
chr2:18208948-18210767
Coord C2 exon
chr2:18210768-18210970
Length
1820 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATTTCTGTTTTGAACTGCAGAGA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GAACAGCATCAGGCCTTCCTATACCAGCTGATGCAGCAGCAGCACCACCCGCCTGAGCTCCAGCAGCTGCAGCTCCCGGGACCCACGCAGATCCCCATCAACAATCTCCTTGCAGGTGCTCAGGCGCCTCCACTCCACACAGCTACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACGAGCCAGAAGGTCACA
Seq A exon
GTAAGTATGTTTTGTGCTGCATCTTGGAAGCAGGGTGAGCCAAGTTGGATGGTCTTGTCTTTTTCCATGTTATTCCCCCGACCTTTTCTTCTTAGGGCCAGTTGTTTTAGCAGCTGGATATTGCAAACTGAGTGTCTAAGCTAACTTAATTTACGCCTCTCTTAAGTATATCATATAAGGTTATAAGGCCGTTTGTAATACAGCATTTTCTAAAATGTTAGCAAGATATATGAAATTAGCCCATTCAAACAGATTGGTTTTTTTTTTTCTGCTTTTAAAATGGAGTCACATTTTTGATATGGTAAAATACACAAAATTAGGGCAGAATTCCTAACATTATTCCAGATTCCTTGAGAAAATCAGTTGCTGTGCTGCAGAGATGTCCACACCAACAGCATCCAAAGCCCCGCTGCTCTCAGCACCTGTCACTCCAGCTCCAGGATGCCCGGCTCACTTTGTTTTTCTGTAGGCACCTGCACACATACACACAATAGAAATGTTCCCAAAACTTAATTACAGTCACAATTTTAATAAAATGTAAAATTTAAATTTTTTGACCTTATAATTTGTAAGTCATAGTATCTCATCCTTGAGGGGCAAAGGTCAACACGTGAGCAACCTGCACAGGGGCTCCTGTTTTAGGAAGTCCTGCAGTGCAGACAAGGAGACCTGGTGCCAGGAGGGGAAAGAATCCAAGGGCCAGAGGGACGCCTGCAAATCTGAGTACTGGTATTACCATATTCATTGCTTTGAGATTTTTCTCTCGTTTTAACCTTCAGAAACATTAGTTTTCATTTAGTAATGAACACTGGTTCCGAATGTGGGCTAACTGCCGAGTGCTTTCTGTTTGTCCTCTCCTGTGTGCCTGCTTCCTAAGTGTGGGAGCTGTTACCGTGCATCTTGCCCGCTTTCCCTACGAAGGAGTCTATGCTTATATAGACATTTGACACACTTTATTGTGCTTTCTGCTCATGGATATTTTCCACATTAAAAATAGATTAATTTTTAGTGGAAGATCCACAATAAAGAATGAGAGTAACCAGCTTCTTGGGGGGGGGGGGGCAACAGCACATAAGCTCAGCTGCTCGGTGGCTAAAGCTGGAGGGTCATGAGTTTGTGGACAGATATATATATATGCCCCATATCTATCCGCCCCTCCCTTCCCCGCCTCCCCCCTCTCCTTCTCAGGCCCCCCTCCCCAAGACAAGGACTCTGTATAGTCCTGGCTGTACAGGAACTCAGTATGTAGACAAGGCTGGCCTTGAGCTCATAGGACCTGTTTATCTCTGATCCGTTCTTTTGGGATTAAAAACAGGCACTTACCACACCTTGCTGAGACCTAATCTCAAGACAAACATCAAAACCAACTGTAAGCTGGTTGGGAGGGAAGTTAAGGAGTCCCTGCCAGGTACAATGTCATATGTGATTTCAGTTCTTGTAGGTGGGAACCCACTTACAATAGGCAAGAGCTAAGAGAGGTCAAGAACATATACGACTATGGGGTCAACTATGGCTTTTTCCTAGTTCATTAAAACTCAGTATTTGCCCTCCTTTGCTCCTCCTATGGAAAGGTGGATCAGGAAAGGTGATGCTACATCCTTAGAATTGTGTCCAAGGATGGGCTCGCCACCTTGGTGCCTTTCCATGTGCGCAGTGTGGTGATATAAATAAATCCATGGTCACTCTGGGGAAGACTAGCTGACTTGAGGAGAAATCACTTGTACCACATTGAACCAGCGACAGTCTCAGAGGGTACTGTCTCATCTTGGCCAACATTGGTTGAACTAATTAATGCTTCTTATTTCTGTTTTGAACTGCAG
Seq C2 exon
AGACTTAGTGATAAAACTGGGCCTGTAGCTCAAGAGAAAAGTTGACACTTGAAAATGGCCAGAACTCGCCTTTCCTGCTGTTCTGTGCTTCACTGGCTGCTGCAGTGTCTGCCACAGCTATGAAGAATGGAGGCGGGAACACACAGGGGAGGATGCCACACACTCCCTTGTAAGGCTCTGATTTTCTTGTTGCTTTGTTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743:ENSMUST00000114680:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTCCTATACCAGCTGA
R:
CAAGGGAGTGTGTGGCATCC
Band lengths:
358-2178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types