HsaINT1023984 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1231996-1232544:+
Coord C1 exon
chr11:1231996-1232160
Coord A exon
chr11:1232161-1232449
Coord C2 exon
chr11:1232450-1232544
Length
289 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTC
5' ss Score
3.28
3' ss Seq
AGGTCAGGTCTTCCCCACAGAGA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GCCTGTGTGGGAACTTCAACCAGAACCAGGCTGACGACTTCACGGCCCTCAGCGGGGTGGTGGAGGCCACGGGCGCAGCCTTCGCCAACACCTGGAAGGCCCAGGCTGCCTGTGCCAATGCCAGGAACAGCTTTGAGGACCCCTGCTCCCTCAGTGTGGAGAATG
Seq A exon
GTACTCCTCGCCCCCACCCCCACAGTCACCCCAGGCTCAAGTCCCACCCAGCACCTTCCTGTCCCCTGGGCCACGGGGACCCCTGGGTGGGATTGGGGACCCCATGGAGGCAGGTGGGAGGCATCAGGAGGAGGTGCTTGGGGCCAGGCGGCCAGAACCCCCCAAGGCGCAGCAGGTGAGCCGCAAATTCCAACTCACTGTTCCCCGGGCTGAGGGGGTCGCAGGCCTGCGTGTCAGGGGTGTGGGCTTCGGGGCAGGGCGTGGAGATGAGGTCAGGTCTTCCCCACAG
Seq C2 exon
AGAACTACGCCCGGCACTGGTGCTCGCGCCTGACCGATCCCAACAGTGCCTTCTCGCGCTGCCACTCCATCATCAACCCCAAGCCCTTCCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(41.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGTGGGAACTTCAACC
R:
CGAGTGGAAGGGCTTGGGG
Band lengths:
260-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains