RnoINT0095713 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214786934-214787378:+
Coord C1 exon
chr1:214786934-214787098
Coord A exon
chr1:214787099-214787283
Coord C2 exon
chr1:214787284-214787378
Length
185 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACC
5' ss Score
6.62
3' ss Seq
CACATTTCTCCCTCTCCTAGAGA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GCCTGTGTGGAAACTTCAACCAGAACCAGGCCGATGACTTCACGGCCCTCAGTGGGGTGGTGGAGGGCACAGGGGCAGCCTTCTCCAACACCTGGAAGACTCAAGCCTCCTGCCCCAACTCCAAGAACACCTATGAAGACCCCTGCTCATACAGTGTGGAGAACG
Seq A exon
GTAACCACCCTCTCCAGCCATTAGCCAGTCTGACAGCCCTTCCTGACCTCTGGGCCACAGGAACCCCCAAGGGAAGGGCTCAGAGAACCCCCATGTAGACAGGAAGGCATGAAGGGTTAAGGTTACAGCCAGGGACAGGCTCTGAGGAGCAGCTGAGGGGCAGCCCACATTTCTCCCTCTCCTAG
Seq C2 exon
AGAACTTCGCTCGGGAGTGGTGCTCGATGCTCACTGAAAGCTCAGGAGTTTTCTCAGCCTGCCATGCCACTGTTAGCCCGGTGCCCTTCTACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(37.8=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGTGGAAACTTCAACC
R:
GCTAACAGTGGCATGGCAGG
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]