DreINT0099037 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8290427-8290771:+
Coord C1 exon
chr25:8290427-8290585
Coord A exon
chr25:8290586-8290676
Coord C2 exon
chr25:8290677-8290771
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TTTGTTTTTTTGCCTCATAGAGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTCTTTGTGGGAACTATAATGATGTCCAAACAGATGATTTTAAAACTGAATCAGGCATTATCGAGGGCACCCCAACATCCTTTGTCAACTTTTGGAAACAAAACTGTCCAGATCTTGAAATCACATTTGACAACCCATGCAGCTTGAACATGGACACAG
Seq A exon
GTGCTTATTCCATTTCCGCTCAGAACATTCATATTGCACTTGATCATTCTTCCCGGGATTGATCCTGTTTCTTTGTTTTTTTGCCTCATAG
Seq C2 exon
AGAAACTTGCCAAAGACTGGTGCTCCCGCCTTACAAATCCAAATGGCACCTTTTCCGAGTGTCACTCAGAAATATGTCCTGAGATGTACTACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.4=35.2),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(40.8=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGCATTATCGAGGGCAC
R:
GACACTCGGAAAAGGTGCCAT
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]