HsaINT1023988 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1233793-1234305:+
Coord C1 exon
chr11:1233793-1233848
Coord A exon
chr11:1233849-1234204
Coord C2 exon
chr11:1234205-1234305
Length
356 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCACCAAGCTCTGTCCCCAGGGT
3' ss Score
6.95
Exon sequences
Seq C1 exon
TTCATGTACGGGTGGGAAGCTAAGCTGCCTGGGAGCCTCTCTGCAGAAAAGCACAG
Seq A exon
GTAAGTGCCACCCCTGCCCTGCCCTGCCCTGCCCCGCCCCGCATCACCCCGCCTGGCCTGGCCCCAACACGCCCCACCCTGCCCCACCCCACCTGAACCCTGCCGGGCCAGGTCAGTCCTCACCTGGGCTCTGCCACAGGCACCCATGCCCTGACACGCCAGGGACGGAGGGGCCAGTGGGTCTCTGCCCCGCAGTGTGGCCGGGGTGTCCTGGGGTTGGGGGCTGCAGGTGTCATGGAAGCTTTGGCTCGGGGGCTGTTAACTTGATCAGCAGGACAGGCTCAGGGCTGCCTGGGGTCAGTTGAGGGCCGTGGCTGCCCTTCCCCAGGACCCCTCCCACCAAGCTCTGTCCCCAG
Seq C2 exon
GGTGTGCAGCCCCCATGGTGTACCTGGACTGCAGCAACAGCTCGGCGGGCACCCCTGGGGCCGAGTGCCTCCGGAGCTGCCACACGCTGGACGTGGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(51.6=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains