HsaINT1026493 @ hg38
Intron Retention
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr4:667856-670782:+
Coord C1 exon
chr4:667856-668006
Coord A exon
chr4:668007-670048
Coord C2 exon
chr4:670049-670782
Length
2042 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
TCTGTCTTCTCTTGCAGTAGGCA
3' ss Score
6.01
Exon sequences
Seq C1 exon
GAGTTCTCTCGTTTCCACGAAGAGATCCTGCCCATGTTCGACCGACTGCAGAACAATAGGAAAGAGTGGAAGGCGCTGGCTGATGAGTATGAGGCCAAAGTGAAGGCTCTGGAGGAGAAGGAGGAGGAGGAGAGGGTGGCAGCCAAGAAAG
Seq A exon
GTCTGGCTCTGTGTGGCCTGTGGGGCAGGGACTCGGTGACTCTCCCAAGGCAAAATGAAAAGACAGGGCACAGAGCAGAGTTAAAATGGAGAAAAGCAGAGCCACTTTCAAGAAGCCTCGAGGTGGACAGGGCCACAGTGCAGGGAGAGAGGCCACGGCGGGGGAGAGTGGCAGCTGACTCCACCTCGGTAGCAAACCCGGACTGAAAAATTTCCTCTGTTCCTAGCCAGTGAACCCCATTTTTCAAGAAAGAAGTAACCATATCTTATGTCCTTTATAAAGGACTTAGTTGCAACAAGTCAGCACACCCCCAAGTTCAAATCCCAAAGGCATCGTGGTCTTGCCATTGGCCCGCACTTGGCTACCTTAGCTCTGAGGTTTGGCTTGCTATTCCCGCTGCTCCCAGTATCCCATGCTATTCCCGCTACCCCATGCTGCTCCCACTACCCCATGCTGCTCCCACTACCCCATGCTGCTCCCACTACCCCATGCTATTCCCCTACCCCATGCTAGTACCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTAGTACCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCGCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCCTACCCCATGCTATTCCTGCTATGCCATGCTATTCCCCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCTATGCTGCTCCCACTACCCCATGCTATTCCCACTACTCCATGCTGCTGCCACTACCCCATGCTAGTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCCTACCCCATGCTATCCCCCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCACTACGCCATGCTATTCCCGCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACGCCATGCTATTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCGCTACGCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATCCCCCTACCCCATGCTATTCCCGCTATCCTATGCTACATAAACAAGGCGACTTCAGGACTATGGAAGGCCAGGATGAGCATAATCAGGGCACAGTGTCAACAGAGGCTAAAGCACTAAGAAAGGCTCAGCCCAGCTAATCGGCTTGGGCTGGTCACAGACCCAGGTGCTGTCCTTCCTCCTGCAGGGGTTGGTAGAGGTCACACCAGGCAGGAGGGAAGGAATAGGGCTGGTGTGCACAGGTGGTTCCACTCACCATCTTCTGTCTTCTCTTGCAGTAG
Seq C2 exon
GCACAGAAATTTGCAATGGCGGCCCAGCACCCAAGTCTTCAACCTGCTGTATCCTGTGAGCACTGGTCCCATGGGGACCCTATGGCTCCCTCAATCTTCACCCACTAGGATTTGGGTTCTGCCTGTGGCTATTTGCTACAAGAGGTTAGGAAGCCCAAGAAAATGACTGAAGATCATTCTGGATATTTTAATTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCCGTGGCACGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACACATGGCTAATTTTTGTATTTTCAGTACAGATGGGGTTTCACCATATTGGGCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCACCCGCCTCAGCTTCCTGAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCTGTTTTTATAAACTGAAGCCAACTGTGAATAAACTGTAGCCTACATTACTCATCCATTTTTGGATAGTTACCACTGGGAGACCTTTGAAAAGGGTCCATGAACTCTGAAATCACTGAGAACATTTGCAGCCACACATGTACATATGTGTACACAGGTAGACAGATGGACACAGGCCGTTTCTCATCCAGTTTAGGAAAACACACATGCTCAGGAATTCAGAATAAAATAAACAGAAAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256:ENST00000255622:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(23.5=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains