HsaINT1026772 @ hg38
Intron Retention
Gene
ENSG00000112511 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr6:33414477-33414829:+
Coord C1 exon
chr6:33414477-33414544
Coord A exon
chr6:33414545-33414724
Coord C2 exon
chr6:33414725-33414829
Length
180 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CATTTCTCTTCTTGCCCCAGTTT
3' ss Score
7.73
Exon sequences
Seq C1 exon
CTTTCAGACACCCCCAAAGGAGAACGTTCTTCCAGGCTCCTCTCTGCTCTTAACAGCCACAAGGACCG
Seq A exon
GTGAGTTGGAGGGAAGAGGAGGCAAGGATGAGGCTCGGAAAGAGATGGAGAGTGGAAGCCTGGAAGGGGAGGGGCTTGCAACCCACCTGGAAGACTGTGACTGAAAAGGATTGAGGAATGGCGTAAGGAGGAACCGTTTTTTACAGCACTGACCCTATATCATTTCTCTTCTTGCCCCAG
Seq C2 exon
TTTCATTTCAGGGAGAGAGATTAAGAAGAGGAAATGTTTGTTTGGTCTCCATGCTCGGATGCCTCCCCCTGTGGAGCCCCCTACTGGAGATGGAGCACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112511:ENST00000374512:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACACCCCCAAAGGAGAA
R:
CTGGTGAGTGCTCCATCTCCA
Band lengths:
170-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains