HsaINT1028639 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9196571-9197123:-
Coord C1 exon
chr12:9197012-9197123
Coord A exon
chr12:9196686-9197011
Coord C2 exon
chr12:9196571-9196685
Length
326 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GGTTTTGGTATTTTTCTCAGCTT
3' ss Score
4.65
Exon sequences
Seq C1 exon
ATACACTTATGGGAAGCCTGTCCCAGGACTTGCAACTGTGAGCCTGTGTAGAAAATTATCTCGTGTTCTTAATTGTGACAAGCAGGAGGTCTGTGAGGAATTCAGTCAACAG
Seq A exon
GTTAGTAGGCGGTATTCTCCCTCAGTGCTATCACTGTTTACAACCAGTGAGACTCCATTTTACTAACTAGAAAGAGGGCATCAGGACAAGCTTGTCGCAAAATATCCCCCACCAAAAAACGAATTTCTGTTCTTAGTCAACAAGATTCTCATTTGGACGACTAACTTTGGAGGTTACAAAGCAGATATGAGTATTAAGTTCTCGAAGGTCAATTAACTTACTTAATGCAAAAAAAAAGTTTTCTTGTCATTAGAGACAGAATAGTAGATTCAGTGACTATTGATCTCAATCAGTTTGACATTTATTGGTTTTGGTATTTTTCTCAG
Seq C2 exon
CTTAACAGCAATGGCTGCATCACCCAACAAGTACACACCAAAATGCTCCAGATTACAAATACGGGCTTTGAAATGAAGCTTAGAGTGGAAGCCAGGATCAGAGAAGAGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTATGGGAAGCCTGTCC
R:
TCCCCTCTTCTCTGATCCTGG
Band lengths:
222-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains