HsaINT1028861 @ hg38
Intron Retention
Gene
ENSG00000107263 | RAPGEF1
Description
Rap guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr9:131589886-131592183:-
Coord C1 exon
chr9:131592099-131592183
Coord A exon
chr9:131589979-131592098
Coord C2 exon
chr9:131589886-131589978
Length
2120 bp
Sequences
Splice sites
5' ss Seq
CAGATATCC
5' ss Score
-0.27
3' ss Seq
TTCTTTAACCCGTGCTCCACATA
3' ss Score
-2.06
Exon sequences
Seq C1 exon
ATTTGGTGTTGTACTGCGAGGCATTCCTGACCACCTACAGGACCTTCATCTCCCCAGAGGAGCTCATCAAGAAGCTGCAGTACAG
Seq A exon
ATATCCTTTCCTTCCTGACCCAGGGCCCCTGCACCATGGGCATTTTGGAGAGAGAGGGACCCTCTTGCCCTTCAGTCCTCGTGGGGGAAGCCGAGCAGCATATTGGGTGGCAGTGTGATTGAAGTAGGGACACAGGAGCCCCATGGACCGAGGTTCCCACCTCTACCCTCCCGCATTCCAGCTTTGAGCTCAGGCAAGTTCCTCATCTCTAAAAGGGCCGAGTGAAATGATGTGAAGAGGCTGGAACATAGTCTGGGAATGTGTGTCTGGTGGCAGTTGTGGTCATTGGATGATTCTAAAAACGAATTAGACATGCCCCAGACTGGGAGGGGTAAGTGTGCCGGTCCTGCAGACGCCTCTGAGAGACCCTCATGGTCGGCTCCGGCAGCTTCTCAGAGCTGAGCCCCAGGGCGTTGGGCACGAAGGATACCAAGACCCAAATAGACAGCTCAGGGGTCAGCACAGTCACCTTCCCTGGAGCGGACCCTGCGACTGCCACATCCACAACTGGAATGGGCTCCTGTCCCCAGATCTACCCCATGGGCCCACCCTCAGTAAATGTCACCCTCTGCAGTAGTGGCTGAGGAGGACCCCAGGGGTTTGGAAGGACCCACTTGTGTGACCCATTGCCTCTTCAAGTCCAAACCTGCCCATCCTAAGAGGCTGACCTGCAGCTGCTGCTCTAGGAGGGTAGCCTGGGTCAGCTGCTCCTCAGCCACCTCTTTGCACATAGCCCACGGCTGCCATCTGCTGGGCAGCCACCACCACCTGGGGTAGGAAGTCCTGAGTCCACCCGCGCCCCCGCTCCTTCCTGTGTGCCCTGAGCCTTCACTGCTCCACTCAGGGCCTCCTGCAGACCTCCTGGCCTCCTATTCTCCCCTCGTGTTGACCTTTAGAATCCCTGATCTATCAAGACAGACGTGGACATCCTCCATTGGCGGAGCCTCGGGTCCCCGGCAAGTTCTGTTACTCAGAGCACCTGCTCACAGGCCTGACTCAGTGAATGGCTGTCACTCACACGTGTCAAGGACTTGCTGGTCAGGCGAGATGTGCTTTACACCTGTGCTTTCACCTAGCCCTAGCTCTATGACCATTTTTTAATATGTGTGTGTGGGTGTGTATAAAATTACCATATTATACATGGGGCCACTGCTCTATAACTCCCTATTGTGTAATTGAGGAAACCGAGGCCCAGAGACATGAAGGACCTGACCCATGTGGCTGCTTGGTGGGAGAGCAGCCACACGCTGCTTGCCCCCTGCTGCCTGCGCCCAGGCTCTCAGCCTCTGCCTGGCTCAGCCATCATGGAAATATTGCAGCATCAAGGTCTGGGCCTGGTTGGCTGGCGACCCCTGTGCTGTGGGCCAAGACACAGTCCCTGGTACGTTGCTCTGTCCTGAGCCCCATGACTTGGAAGGTCGTGGATCACTAGAGAGCAGGCAGGAGGGTGTCAGAGAGATCTGGGGAGTCGATGGCGAGCACAACAGCCGGGCAGGAAACCCTGACCACAAAGCAGAGCCCGACCTCAGGGCATGAGCTAGAGCTGATCGGGTGCTTGAAGTGCTGCCCTGGAGACAGGGAGCCAATGTGGAGCGTGCTGCAGCTCTGGGAAGAGAGACCCGGCCCGGTGTCACGGAGGTGAGAGTTCCCTTGCAGAGCCCAGGGAGGCAGCCTCAGGATGGAAACTCACAGAAAGACTGGAGGGAGATACTTCTGGCCTACACACCTGCCTAGGGACCTGGGGTTTGGAGGGTGTTTGGTTTGGGCCCACCGTTCTCTACCTAAAGTTCAGCAAGGCACTCTCTACGTGTCTGTAATCTCATGGGCACCTCGGGGTGAACCCGATGGAAAGGCGGGTCTGGACAGTGCAGCGGAGATGGCGTGGCAGGGAGGAGAGGGCAGCAGCCGGGGGCATCCCTGGGGACAGACGCCTGTGCTCAAATCCTGGCTTTGCAGTTGTTCCACTGCGCTAGTCCCGTGCCCTCGTTTCTGGATGCCAGTGCTTTACATGCAGGAAGATGGGCACATTGTGAGCGCTCAGTGAGTGGTCACCAGGAGTCAGTCCTCCACTCCACCACCCTCAGCCGACCACATGGCTATTTCTTTAACCCGTGCTCCAC
Seq C2 exon
ATATGAGAAATTCTCTCCCTTTGCCGACACATTCAAGAAGCGCGTCAGCAAGAACACGTTCTTCGTGCTGGTACGGGTGGTGGATGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107263:ENST00000372189:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(28.0=100)
A:
NA
C2:
PF0061815=RasGEF_N=FE(31.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains