HsaINT1044654 @ hg38
Intron Retention
Gene
ENSG00000153802 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr4:67833204-67835121:-
Coord C1 exon
chr4:67835083-67835121
Coord A exon
chr4:67833382-67835082
Coord C2 exon
chr4:67833204-67833381
Length
1701 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTAATGCCCTTTCTCATTAGAAT
3' ss Score
7.81
Exon sequences
Seq C1 exon
CACTTACTGACCAGGCTGCAGCAAATTGGCTTATTAATG
Seq A exon
GTAAGTTTTAATATTATTTTGTAACTGTAATTTGCCAAATCATAAAGAGTAAAAGTGCAAGTCTTTTGTGTACTTTTGGCCAAGGCAGTATCTATCAAGTTGATGTCTTTGTTCTTAGTTCGCTCAGGTGGTGTTGAAACAAGACAGTGCTGATCCCAAGTGTCCCATGGAGTGGACTTTAGGTTTCCCCTTTCCTTTTAGAAAAAGGAAGAAGTTGTAGTGGAGGACTACCCACTCTGCACTCAAAATTGCCCTCATGAAAATTTCTTTGGCAGCTTTGAGAACCTTTTACTGCCCTGGTTCTAAGGTGGCATTTCTGTAGACTTACAAATTATGTTTGATGACACCGTTTATGTAGCTTCTCCTAACCACCAGAGTAGCTTGCTTTGTTGTGAATTCAGGTTAATCACAAAGTATAATAAAAAAGAATTGTCAGAAGTCTTCCCAGCTTTGGGTCTATAACCTGAAGGAAAAGTCACTACTCTTCAACATCATCCTATGTACTCTCAGGCTAGGATAGCAGAAATGCAATCCCTAGAAAACAGCAACTTACTTCTCTGACCAAAAAAATGCAGTTAAAAATTAGTTCAATGTACCTGGTAGCTGGCCTATCTTAGGTACTTCAGTGATTTTACAAAGTGATGGTAGTCCTATGGGTGTTTTTCAGCTTCACTACGTATTTAATTCATGCTTATTGTTAATGAAACTGTGATAAGCAATTTACTAGGGTATTTGTTTGGGAGATGCCACAAAGGAACACATGTATCTCTTAATGGAAGCCTGGTCCTCCTTTATCCAGGAAATTTGCTAGGAAAAAAAAGCCTTTAGGTGGTTGTGCTATTAAACCAGGGCACTACTTAAAAGCCAGCCCAGCAATAGTTGTGTGATTTACCATTAATTTCTTAGTAATAGACCACACAAAAGAAGAAAATTATGGGAATGCGAGTTGAGAGGAATTGGGTGATCAGCCTACCCCAGCCCGTTTCAGCTCTGGCCAGTAGACTATTCACGAGCTCTTTGAAAACATTTAAATAAACCTTATTTAGATACTAGAAACCCTCTGTCACCCTCAAGAATATTCTGTGGTATAGCGACTCCTTTATGAGGGCATGTTTGGTAATACAGCATCAGTCTTGGAGGTGGACTGGATTCTACAAGGTGAACTGCAGTCACTAAGGAGTCTTTTGGATGAGACCAGTTTTCCTCCAACTTCAATGTGTGCATGAACCTCACATCAAAATGTAGCTTTAGATTTGTCCCATGATGTGGTTCCAAGAATCAGCACTTCTAATAAGTTTCCAGGGGATGCCCATGCTGCAGGCCCACAAACCACACTGAGCATAGCAAGACTATTGAGAAAAAGGAAATTTCCCAGGAGTCTGTGGCCTGAGCTGGCACATCCAATAATGACCTATCTTAACCTCAACTCATGAGGAATTCCAGGGAACTCTGAAGCTGCTCAAAATTTGAAGCCTATATGCCAACTAAATTCAGAAATGTTCTCCAAAATGCTATCTATAAGCAACAGTAGTCACAAATGCATTGTAGAAATATATCGATCATGCTTTTTGGAAAATCCAGCATGTCCTGAGGAAGAATGTATAAGACATAAAAGTCATAAATTATGGAAAGACTCTTCAGCTTCTTCCAAATGTAAAGGAATCATGATCTTCCCAGCACATTAATGCCCTTTCTCATTAG
Seq C2 exon
AATGTGGGGCCGGTCCAGACCTAATAACATTGTCTGAGCAGAGAATCCTTGGAGGCACTGAGGCTGAGGAGGGAAGCTGGCCGTGGCAAGTCAGTCTGCGGCTCAATAATGCCCACCACTGTGGAGGCAGCCTGATCAATAACATGTGGATCCTGACAGCAGCTCACTGCTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153802:ENST00000283916:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTACTGACCAGGCTGCAG
R:
CAGTGAGCTGCTGTCAGGATC
Band lengths:
208-1909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains