HsaINT1046053 @ hg38
Intron Retention
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:158101870-158106216:+
Coord C1 exon
chr2:158101870-158102125
Coord A exon
chr2:158102126-158106098
Coord C2 exon
chr2:158106099-158106216
Length
3973 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTATAATTTTTTTTTCCAGAAA
3' ss Score
9.13
Exon sequences
Seq C1 exon
TATTTGATAGGAAAATTTAAAATGCTAAAGGAAAAATTTTCTTAGCAATTTCACAGGAAAACCTAAGTTTTAAGAGAGGTTATCATTCTGACTGGGAACTGAACTATTATGACTAGGTCTATAATTTAATAACAAGTCACAATATCTCTCTTTCTTGACATCAATTTAAGGTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGATCTGACAGGAATACATATGTTGG
Seq A exon
GTGAGTAATTTTGATTTTGTAAATTTGTTTTGATCAGATGGTTGCTCCTTGGATTTTGTATTAAATGATTAGATAATGGGCCTCTACAGTTAAGCAAATTTCTTAAATGTAGAGATTATATCACTGGATGCAGCTCATAAAGCAATAAAAACAGTGGAAAATGTATTTTCAATGACATTTTTACTCCTTGGTTTTGGGGGTTAGGGTTTGGCTCATCTAAGAAAATGGGGCAAAATAAATTATAAAAAACATGCAAAAGTTTAGCCAACCTTCAGTAGTAAACAAATTCAAGGTTCAGCCTGGGACTCACTATAGAGTTCAGCCCTTAATTCTAAGACCATGGGCTGCAAATGAGAAATAATTAAAAGGGCCTCCCAGTGCCTGAGGGAGGTTTAATTGTATTGCAGGATATTGTGGAGTGATTTCATATGCTTCATGATGGACCTTACATAGAATTTACTTCTGAAATACCGTCTATGTGATTCATCTCATGGGTAGATATAAAATTGCTGAAGCTGTCTACAAATTTAGCTCCAGTTCCTGCCCCAGGTTAACAGAACACAACAGAGCATTAATCATCATGAGGCATAAGGAGATTTTGCTGGTTCCCTCTGATTTCCTGAGAGTTGTGTGAAATGTCTTGCTTAGAGCCTCCATTATGTCAGCATTTCAGAAAACACTCCATTTGCCCATCCCAAACAGAGGTAGCCTCCTGCATGTTCCCTTCTTCAGGGAAGCCCAGGAGAAAAAGAAAAGGAAAAATTATGAAGATGAAGGTAATGGCAAATGGAAAGACTTCTGCTCAGCCAGCACTTTCTTTTGGTTACCAATATTTAATACTCATCATGTAGTGTAATTTGTCACGATTTACTAAAAAGACTATTCTATGTGTTAGGAAAAGGAAGAAGAGTTTGAAGATTCAACAACACATATAAACCTATTTAGTAAAAATTATATATTTTGGAAAAATCAAATATTCCAAAAACTACATTCATATTGGGTAGAAATTTGGCATGAAATCCCAAACAAGTTTTTTCTTTGGTACTGATAAAGTGATCATCTTAGAAGTGCTTCTGGATGAGCCCAATGAAACAAGAAACTTCTATAGACAGTCCCCCAAATTTTCTGACGGAGAAATCATTAGACGTTGGGACAGGGCATCAAGGAAAACTAATCCTAATGAATTAATAGTATTATAATTAATATAAGTGAAAATAATTAATGGCTCTGCTGGTTGGAGAATTTCTCCTTGAAGATAGGAAGTGTGTGTATAGATGAGTGATTTTAAAAACACCAAAGCCCAGGTCTCCTTGACCAAGTCAATCCAAATTTCTAGAGATAGGGTCTAGGGATAAGTACTCTTTAAAGTGCCCCTGGTGGTTCTGATATGTAGCTGGAGTTTGGAATCACTAGGGTAGAGCAATGAGACTCTTTTATAGAGTAATGATTCATAGATTCAGTTAGGAATCCAAAGGAATATTTCCAGGTCGTGAAAGTAGTCTTGGCAGAGTGAAACAGAAAGTGTAATAGAATTTGGAAGAAAAAGTTTATGGCAGTGTTTGTCAAACTTTAATGTGCATGTGAATCACACAGAGTTTGTTAAAATGCAGATTTTGATTCAGCAGGTATGGGGTAGAATCTAAGACTTTGCATTCCTAATGAGCTCCCCAGATGTTCCTGATGCTGCTGGTTCACTGACCACACACTGTATAACAAGGGACTAGGGATAAATTCTTGCCTCACAAGAGAAGAAAGGAAATGTCCCTTTGCTTTGAGATTTTGAAGCTTGTTCTGTAGTAGTAATGTGTACTAACACCACGGAATACTTTATTTTTGAAACTAGGTACGTATGACCCAGTAACTAATTAAAAATCTATAACTCTAGATGTTTTTGAGAAGGAAATTAATAGTATTTTGTTCCAATTTCTGAACAGTTAAATTTAATTCAACAATAGAATTTGTTAAAACTTAGGGATTCAAGAAGGATATTTGAGATAGCTTGCATCAGGGGATTCGCAGTCTTTCTAGAGGGATGGAAACTTAACTATATTGCAATGTGAAATGCTATCTACCAGCATTAGCATGAAACAAATGCTTTGGGAACACAGTGAGAAAAAAATTAATACTGATCAAGGAGAGAAGATGCTTGGAAAAGCCTTCACGGAAGAGGTAATATTTGAATTGGACCATAAAGGAAAATTGGAATTTGATAGGTGAAAAGTGGAAGAAAGGGGGAAGGATGTTTGAAGGACAAAGGCCTGAAGCAGGGGTTCTCAACTTTGGCTTCACCAAAGATCATTTGAGATTTTAAAAATACTTAAAATCTTTAGATTTAAAATACAGAGTGTCTAAATTAATTAGTGCCTGGTCACCAGTGTTTTTTTGTTTTTGTTTTTGTTTTTAAAGCTCCCTGGTAATTTTAATGCAAACCCAAGTGAGAATCGATAAAGATATAGAAAGACACAAGGCCTGGTAAAATGTTTTGAGGTGTATGGAATGAAAGCCATGTGGAAAGGCTAGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTAAGGTGGGTGGATCGCTTGAGGTCAGAGGTTTGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAACATTAGCTGGGTATGGTGGCAGGCACCTGTAATCCTGGATACTCAGCAGGCTGAGGCAGGAGAATCGCTTGAACCAGGAGGCGGAGGTTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGCCTGGGTGACAGAGCGAAACTCTGAAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGAGAAGGGAAGGGAAGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGCAGGCATGTGGAGAGAAATGGAGGAACAAAGAACAAAGAAGTCTCAGACAGTTCTTGGCAAAGACGTCTTGACCCACTGTGGTGTGGGGGTAGATAACTTTTATCACTAACAACTCTAGTGGCATATGATTACTATCCAAATAACCGAAAGCTACAAATGATATGCTTCATAAATATGAACTAGATTGAATTAAGGTCATTCTTATAGCCGTCATCAGCTCACTGTCTTGAATTTCGTGGTATTTCACAAAGAAAAGGGAGGAAGGATTGGTGTTCTAGCTAGCACTGCCGTGATGGGGGTTTGAGCCAGGGCCATGGCCAGTGGGGTAGAAAGAAAGTGGTGTGTTCAGCATGGTTGGTGGAGTCCTCAATGGCAGCGCTATTCAAAGTGTTGTCCATAGACCATCAACATCAGGACCAATGAGGAGCTTGCTAGAAATGCAAATTCGGACACACATCAGCAACTCACTGAATCAGAATTTCCAGAAGAAGAGTCCATGAAGTGTCCGGCTGATTGTTATGCATGCTACACTTTGAGAAGATAAAATAAAATACAAATAACTTACTCAAGGTTGCACAATTAGGATATATATGGTTGAACTTGTACTGGAACCCAGGCAATCTGAATCCAGAGCCCAGTAGTTTATATTCCACAGCCTCCCATGCAAAGAAATTAGATGACCGTTACAGTCAGAACTGAATAGAAATGGCTGTTTTGTAATTTACTGGTTGTTAATCTTGCACAAGTTTCTCAACTTCTGTAAGCCTTGGCTTCTTTGTAAACTAAATTATTAATCTTACCCAGCTAAGAGGGCAGTTATGGGACAAATGAGTTAATGCATTTGTTATATGCAGTTTTCTTGCCATTTTCATGCTCAGTGCTATGCTTGGCACATAGTGTGGGCAAATATTAGCCATAATTACTGTTATACTACATTGCTTCTCAACAAATAATTTAACCCTAAAGGAAGGTTTATGTTCAGACTTTCTTTCTTGTGAGCTTTCTCTCAAAATTCTTTTATATCTTCTTTGTATAATTTTTTTTTCCAG
Seq C2 exon
AAAAAGGTTTGTTCACGTTAAAAATCCTTACTTGGATTTGATGGATGAAGACATTCTCTATCACTTGGATTTGGGAACAAAAACACACAACCTACCAGCAATGTTTGGAGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001:ENST00000005756:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains