MmuINT1034488 @ mm10
Intron Retention
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58761809-58763792:+
Coord C1 exon
chr2:58761809-58761862
Coord A exon
chr2:58761863-58763674
Coord C2 exon
chr2:58763675-58763792
Length
1812 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ACCATTGTGTTTTTCCCTAGAAA
3' ss Score
10.67
Exon sequences
Seq C1 exon
CCCTGGCTGGACTGAGATTCCACAGTACAGACCAGGCTGCCCTCAGATTCACAG
Seq A exon
GTAACAGCCTGCCCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCATGCTGGGATTAAATGCATGTATTGCCATGCTCTGCTAAAGGGTTTGTTTTACCTCACCTTCTATTTCGAAGTTTCATACTTCTTAAGACAATAGCTTTGAATTTTGTTTTACATGTTTATTAAGATTAAATAAATCCCTTCTGCTCATCCCCCCTCCTTTCTTTAAGCTCCTTCGCCATGTTTCTTCAGGCTTCACTTTAAGCATTTGATTTATCGCTTAGCTAACTCTTGTTTCCCCAGCCTGAGCCTGCTCCTCCTTTCTTTGTCTCTGATGTATGCCAACCCACCTTCCCCAGGAGCCTGCACCCAGCTCGCCATCCTCTGAGGTCTTTTTCTCACCTAAGCCTTCTAATGGGGTGAGGATCACTTCCAAGCTCACTGATCACAGCTAGCAAGCTCTCAGGGATCAGACACCAATACCGGCTGAGCTCAGAGGCTTCTGGCTCAATGCAAATCATGGATGAAGAGGGGATGGACTCCAGATAGCCATTGAGATGGTGTAATCCAAAGCCAGGCAGTACAAAAGACAAGTCTCTTCCCCACATTCCTTTGTCCAAACTCAGTCATATGACACTATCTCACTGGGCATTTACCTAGTAGTGTACCCTAAAGGAAAAGAACTGGAGGTCACAAACACAAAGCACTTTGGGGCACACTCTGCTTTTTATATCTCAATAAAACCCTCACAATATTGCAAGTAAAGGGATAAGGAATACTTCTATCATTACACATAAGGCTTTTTACAAGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTCTGTGTGTGTCTCAGTGTGTGTGTGTGTGTGTGAACGTCAGTTGTTGAGTCTCATGAATGAAGGTGTTTGTCACTATACCTCCCAATGCCTTATAATTCAAGGCTCACAAACCTGCCTAGTGGCAGTTTTCATCATCCCTACTTCACAGATGAGGGAACAGAAGGACAAAGTTAGATTGCTCATGCTTGTACAACATGTGTATGTCCAGTTGATCGTGCACTAGAACAAGGGTGGTCTGAGAGCCATGTCCCTATATTATGTAACCTCACAGTAAGAGAATGACAATTAGGGACAGAGTGAACTGAGGAGAGATGACTGTACATTTCCTGGTTGCATGGGATTGCTCAACTTCTAAGAGCCTTGATGTCTTCATTTGTAGATTGGATTATTAATATTACTCATCTAATGGAATGGTCATGGTATTAAATGAGTCAATGTATTTATTTCTTCAGTTTCCTAGCATGGCGTAGTTTCATGCTTAGGTCTAAATGGCATATACTAATCATAAAACAAATGTTAGCCATATTATAGATTTAATTATGAGAGGTTTTTGTGCAGTCGCTGTGTTAGTGGTGATCATAGGTGTAGACTGTTATCCTGTCTCAGGAGTGCTTTCTCTCCAAATATCTTGATATCACCATTGTGTTTTTCCCTAG
Seq C2 exon
AAAACGGTCTGTGTATGTTAAGAATCCATACCTGGAAGGCATGGACGAAGACATTCTCTATCACTTGGATTTAGGAACCAAAACACACAACCTACCAGCAATGTTTGGGGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839:ENSMUST00000059102:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types