HsaINT1047265 @ hg38
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35093394-35094083:+
Coord C1 exon
chr1:35093394-35093441
Coord A exon
chr1:35093442-35093913
Coord C2 exon
chr1:35093914-35094083
Length
472 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTATCAATATTTTATTTTAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCAAGCGATTCTCGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG
Seq A exon
GTATGTGCCACCACAACCCGGCTAATTTTTGTATTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGTTTACAGGCGTGAGCCACCGACCCTGGCCGAAAGCTTTACATTTTCTCCTATTGAAAAGTTAAAAATAAACTTGTAAGTTTTGGTGGTTTTATGCTGCATTCAGTCTTGGGGGAACAGAAACGGAGACTATTTCCAGAAGAAGGCACAGAGTTGGTAGTAGCTACCAGAGAAGTATAGAGCAAAACTATATTGAAGAATAATGGATGAAAGGAAAGAAGCCAGTGTTCTTTCAATGAAGGAACCTTGATGCCAAGCTGTCTAAAGACCCTTTTGTGGTTCTAGAAAATTACCATATTTAAAAGGACTAATTTTAAAATCAAACTCTTTATCAATATTTTATTTTAG
Seq C2 exon
GAATCTGGAAACTGTTCTTCAGGAAGAAACCCATTAGTTTGGAACTGGAGAATTCCTTTGCATCAGATACTAAAATGAAAGAACCACTTTTAGGTGGTGAGTGTGACAAGGCAGTGGCATCACAGCTGGGGCTGCTAGATGAAATTAAGACAGAACCCGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056:ENST00000373330:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCGATTCTCGTGCCTC
R:
TGAGCATTGTCGGGTTCTGTC
Band lengths:
216-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains