HsaINT1047373 @ hg38
Intron Retention
Gene
ENSG00000089335 | ZNF302
Description
zinc finger protein 302 [Source:HGNC Symbol;Acc:HGNC:13848]
Coordinates
chr19:34683155-34686397:+
Coord C1 exon
chr19:34683155-34683238
Coord A exon
chr19:34683239-34684251
Coord C2 exon
chr19:34684252-34686397
Length
1013 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
GCTTTCTTGATATATTTCAGATT
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTTTCCGTAACTAAGCCATATGTGATCATGTTATTGGAGGATGGAAAAGAGCCCTGGATGATGGAGAAAAAACTGTCAAAAG
Seq A exon
GTATGATTCCACATGAGTCATGGTGAACGAGACAAAGGAAGATTTTGTTAAAGATGTTTATAGTGAGTGTGGAAGCATTTTAGGGATACTGTCTTCAAAGATCTCAGATAGAAATGAAAAATTGAGGGATATTTAGCTTAGATTTTCAAAACAATTGTTCCTCCCTCTCAAATTATTATCTGTATCACTCATGTCACCTAATCAAGGTTAGAGGTTTTTGCCATCATAATAATTCAAATTGTTACTATATTCATGACAAAGTAAGACAATTTATTCTTTCTTAATTCTACTTAAGAAAAATATACTAATAGTTTTAAGCTAAGAAAAGCTGTCAGTTAGATGGAAAATCACTTTTCTAAAGCTGAGCTTTGTAGATGAAATATGAACATATTAGAGGAAGTAAGGGACATATAAATGTTTCTAGGAATAATATTTTCTAATGTTCAAGAAAAATATGATTCACACAGTTTCTTCATAACCTCAGAAAGCCTATATCTTTGTCAGCTATAAAGAGCATTTACTTTGTTTTTACTGCAGTTGTTTAATATAGTAGTATCAATTCTGTATTTTAAGCTTGATAATCCAGCAGCAAATTGAGATTAATGGAAGGTTGGAAAAAAAGGCTATGAAACAAAATGCAACCTTTCCCACATGAATATAGGCACAAAATGATGATTTGTAATCCTGAATGCCTTCCACATCTTATTTCTGATACTTTCCTTTTTTCCATACTATTTTATCCATTTCGTACAGCTTACCCATTTCCTTTATCACACTCTGTTCCTGCTTCTGTGAACTTTGGATTCTCTGCTCTATTTGAGCATTGTTCAGAAGTCACTGAAATATTTGAGTTGTCAGAACTATGTGTTTTCTGGGTGCTTCATTTCTTATCCAATTCTCCTAATTCCACTGTAGAAGCTTTTTTCAAGAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAGTGCTTTGCTTTCTTGATATATTTCAG
Seq C2 exon
ATTGGGAATCAAGATGGGAAAACAAGGAATTATCAACAAAGAAGGATATTTATGATGAAGATTCACCCCAACCAGTAACAATGGAAAAAGTTGTAAAACAAAGTTATGAATTTTCAAATTCTAATAAGAATTTGGAATATACAGAATGCGACACATTTAGAAGCACCTTTCATTCAAAGTCTACTCTTTCTGAACCACAAAACAATTCTGCTGAAGGGAATTCACACAAATATGATATATTAAAGAAGAATTTATCAAAAAAGTCAGTTATAAAAAGTGAGAGAATAAATGGTGGAAAGAAACTTTTAAATTCTAATAAAAGTGGGGCAGCCTTCAACCAGAGCAAATCTCTTACCCTTCCCCAGACTTGTAATAGAGAGAAAATCTATACATGCAGTGAATGTGGGAAAGCCTTTGGCAAACAGTCAATCCTCAGTCGCCACTGGAGAATTCATACAGGAGAGAAGCCCTATGAATGTCGTGAATGTGGGAAGACTTTTAGCCATGGTTCATCCCTTACACGACATCAGATAAGCCATAGTGGAGAGAAACCTTACAAATGCATTGAATGTGGGAAGGCCTTTAGCCATGGCTCATCACTTACTAACCATCAGAGCACTCACACGGGAGAGAAACCGTATGAATGTATGAACTGTGGAAAGTCTTTTAGTCGTGTGTCCCTTCTCATTCAGCATCTAAGAATTCATACGCAAGAAAAACGCTATGAGTGTCGTATATGTGGAAAGGCCTTCATTCATAGTTCGTCTCTCATTCACCATCAGAAAAGCCATACTGGAGAGAAGCCTTATGAATGTAGAGAATGTGGGAAAGCTTTCTGCTGTAGCTCACACCTTACTCAACATCAAAGAATTCACAGTATGAAGAAAAAATATGAATGCAACAAATGTCTCAAGGTCTTTAGTAGCTTCTCATTTCTTGTTCAACATCAGAGTATTCATACTGAAGAAAAACCGTTTGAAGTTTAGAAATGCAGGAAATCCTTCAACCAGCTTGAATCACTGAATATGCATTTGAGAAATCACATTAGATTGAAACCCTACGAATGCAGTATATGTGGGAAAGCCTTTAGTCATAGGTCGTCCCTGCTTCAACATCACAGTATTCATACTGGAGAGAAACCTTACGAATGTATTAAATGTGGGAAGACCTTCAGCTGTAGTTCAAACCTTACTGTACATCAGAGAATTCATACTGGAGAAAAGCCATATAAATGTAGTGAGTGTGGGAAAGCTTTTAGCAAAGGCTCGAATCTTACTGCCCATCAAAGAGTACATAATGGAGAGAAACCCAATAGTGTGGTAAGTGTGGAAAAGCCTTTAGATCATATGAATCCCTATACATGTGAGAAATCTTACAGAAGAGAAGCAGTGTTTATCACGGTAAACTTCATTCATAGATCCTCCCTTATTTAACATCAGAAAAATGTATACTGGGGAAAAGTTGTATGAAGGTGGTGAACATGGGAGACTTTTAGCAATGATGCAGATTTTTTTATTAGAGTTTATACTGTAGAGAAATCATATGAAGTCAATAAATGTGGGAAAGCCTTTGTCAGTATTAATCCCTTAATTGACCTAAGTATACTCACACTAGGAAAAATCTGTGTACATGTAGCAAATGTGGGAAAGACTATAGGCAATAGGAATCTCCTGCAAACTCCTACAGGAGAAAAGTTGTATGAATGTGGAAACTTTAGAAATTGAAGGAATTTTTCAGTTCCAAGTGCATCCCTTATTCTATAGGAAATAAACTGGAGACAAATCTCATTTAAGAGATGCAGCAAAGTGTTCACTAAGAGTGTTTATCTTGCCAGACATAAGAAGATGAATGGTAGAGCAACCTGAAGGATTTAGAAATTACATATAAATCTTTGCAGTTATGCTATTTGTAAACAGGATTATATAGGAGAGCAAATAAACATAAGTATGCATTTCTTAGAGCAGTAGCTTGCAGTTTCAGTTGAGTTCTACTTAGAAATTCTTTTTAGCTAGTGGGCATGTGAAGATATTTAGTCACCCAGAGGAGCCAGTAAATGTTATAATGTTAAAAATTAAAGCTGCAAAAGAAATAAAATGGTGTTAATAAAAATTTGGCATCTAATAAAATCATTTTGTATATCATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089335:ENST00000457781:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF0136316=FYVE=WD(100=20.4),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGAAAAGAGCCCTGGA
R:
TCTTTCCACCATTTATTCTCTCACT
Band lengths:
345-1358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains