HsaINT1047592 @ hg38
Intron Retention
Gene
ENSG00000221994 | ZNF630
Description
zinc finger protein 630 [Source:HGNC Symbol;Acc:HGNC:28855]
Coordinates
chrX:48060450-48060945:-
Coord C1 exon
chrX:48060819-48060945
Coord A exon
chrX:48060546-48060818
Coord C2 exon
chrX:48060450-48060545
Length
273 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTACAATTTTCTCTTAACAGGGT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GAACCAGTGACATTTGAGGATGTGGCTGTGGACTTCACGCAGGAAGAGTGGCAGCAGTTGAATCCTGCTCAGAAGACCCTGCATAGGGATGTGATGCTGGAGACCTATAATCACCTGGTCTCCGTGG
Seq A exon
GTAAGGGCAGATTCCCTGTGTACCAATGAATCAAATCCTCCTCATCCTTCCTTTAGTGCTGTCAATACCATGACCTTTATGATATTCCTTTAATAGAGTGTGTTCTTTTATAGTTTTGGTTTTTCATGTTTATACTTTTGTTATATCTAGAATTTATTTTTATGTTATGGTGTGAGTTAAGGATCCAACTTTGCTGGGAGGCCCCTGCAAGTGCTTCTCTTCATGAATTTCTGAGCTGCCAAGGCCAAAGCCACTACAATTTTCTCTTAACAG
Seq C2 exon
GGTGTTCAGGTATAAAACCAGATGTAATCTTTAAGTTGGAACATGGAAAGGACCCATGGATCATAGAGAGTGAGTTGTCAAGGTGGATCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221994:ENST00000409324:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGACATTTGAGGATGTGG
R:
TGGGTAGATCCACCTTGACAACT
Band lengths:
220-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains