MmuALTA0003891-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35133958-35135688:+
Coord C1 exon
chr2:35133958-35134111
Coord A exon
chr2:35135468-35135472
Coord C2 exon
chr2:35135473-35135688
Length
5 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCTGTTTTTATCATGCATAGGCC
3' ss Score
7.91
Exon sequences
Seq C1 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
Seq A exon
GCCAG
Seq C2 exon
ATAGCAGCAAACGAAGCTCTGAAGAAGGATTTAGAAGGTGTCATCAGTGGGTTGCAAGAGTACCTTGGAACCATCAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTACAGGATGAGAAAGAGACATTGCTGCAGAGACTGACAGAAGTCCAGCAGGAGAAGGAGGAACTTGAACTCATTGCCATGGATGCAGAAAATATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-28-29,28-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.324
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(36.3=98.0),PF0163315=Choline_kinase=PU(31.0=80.0)
A:
NA
C2:
PF138511=GAS=FE(54.1=100),PF0163315=Choline_kinase=FE(56.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGGACGAGATACTTTG
R:
TTCAGAGCTTCGTTTGCTGCT
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types