MmuALTA0003891-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34989478-34991208:+
Coord C1 exon
chr2:34989478-34989631
Coord A exon
chr2:34990988-34990992
Coord C2 exon
chr2:34990993-34991208
Length
5 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCTGTTTTTATCATGCATAGGCC
3' ss Score
7.91
Exon sequences
Seq C1 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
Seq A exon
GCCAG
Seq C2 exon
ATAGCAGCAAACGAAGCTCTGAAGAAGGATTTAGAAGGTGTCATCAGTGGGTTGCAAGAGTACCTTGGAACCATCAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTACAGGATGAGAAAGAGACATTGCTGCAGAGACTGACAGAAGTCCAGCAGGAGAAGGAGGAACTTGAACTCATTGCCATGGATGCAGAAAATATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-17-18,17-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.334
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(73.1=98.0),PF138511=GAS=PU(41.3=90.0)
A:
NA
C2:
PF059116=DUF869=PD(25.4=23.0),PF138511=GAS=PD(57.8=85.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGGACGAGATACTTTG
R:
TTCAGAGCTTCGTTTGCTGCT
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: