HsaALTA1019909-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121123931-121125936:+
Coord C1 exon
chr9:121123931-121124084
Coord A exon
chr9:121125716-121125720
Coord C2 exon
chr9:121125721-121125936
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCTTTTTGCATCTTGCTTAGGCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
TCCCATATGAAGGCTCAAAAGAGCGGTAAAGAACAACAGCTTGACATTATGAACAAGCAGTACCAACAACTTGAAAGTCGTTTGGATGAGATACTTTCTAGAATTGCTAAGGAAACGGAAGAGATTAAGGACCTTGAAGAACAGCTTACTGAAG
Seq A exon
GCCAG
Seq C2 exon
ATAGCAGCAAATGAAGCCCTGAAGAAGGATTTAGAAGGTGTTATCAGTGGGTTGCAAGAATACCTGGGGACCATTAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTGCGGGATGAGAAAGAGACATTGTTGCAGAGATTGACAGAAGTCGAGCAGGAGAGAGACCAGCTGGAAATAGTTGCCATGGATGCAGAAAATATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-25-34,25-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(35.6=69.2)
A:
NA
C2:
PF138511=GAS=PD(63.4=86.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCTTGAAGAACAGCTT
R:
CCCCAGGTATTCTTGCAACCC
Band lengths:
97-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains