HsaEX0014668 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121123931-121138679:+
Coord C1 exon
chr9:121123931-121124084
Coord A exon
chr9:121125716-121125936
Coord C2 exon
chr9:121138545-121138679
Length
221 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTGCATCTTGCTTAGGCC
3' ss Score
7.77
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCCCATATGAAGGCTCAAAAGAGCGGTAAAGAACAACAGCTTGACATTATGAACAAGCAGTACCAACAACTTGAAAGTCGTTTGGATGAGATACTTTCTAGAATTGCTAAGGAAACGGAAGAGATTAAGGACCTTGAAGAACAGCTTACTGAAG
Seq A exon
GCCAGATAGCAGCAAATGAAGCCCTGAAGAAGGATTTAGAAGGTGTTATCAGTGGGTTGCAAGAATACCTGGGGACCATTAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTGCGGGATGAGAAAGAGACATTGTTGCAGAGATTGACAGAAGTCGAGCAGGAGAGAGACCAGCTGGAAATAGTTGCCATGGATGCAGAAAATATGAGGAAG
Seq C2 exon
TTAGAACAATCAGCCCTTCAAGCAGAACTTGAGAAGGAAAGGCAAGCCCTCAAGAATGCCCTTGGAAAAGCCCAGTTCTCAGAAGAAAAGGAGCAAGAGAACAGTGAGCTCCATGCAAAACTTAAACACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX7-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=0.323 C2=0.733
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(35.6=69.2)
A:
PF138511=GAS=PD(63.4=86.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATATGAAGGCTCAAAAGAGC
R:
AGTGTTTAAGTTTTGCATGGAGCT
Band lengths:
284-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development