RnoEX0022598 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14327735-14331226:+
Coord C1 exon
chr3:14327735-14327888
Coord A exon
chr3:14329089-14329309
Coord C2 exon
chr3:14331050-14331226
Length
221 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCATTGTGCGTAGGCC
3' ss Score
9.31
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCCCATATGAAAGCCCAGAAGAGGGGTAAAGAGCAGCAGCTCGACATTATGAACAAGCAGTACACACAACTGGAAAGCCGCCTGGACGAGATACTTTGTAGGATTGCTACAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACTGACG
Seq A exon
GCCAGATAGCAGCAAATGAAGCTCTGAAGAAGGATTTGGAAGGCGTCATCAGTGGGTTGCAAGAGTACCTGGGGACCATCAAAGGCCAGGCAGCTCAGGCCCAAAATGAGTGCAGGAAGCTGCAGGATGAGAAAGAGACACTGCTGCAGAGACTGACAGAAGTCAAGCAGGAGAAGGACGAACTGGAAATAGTTGCCATGGATGCAGAGAATATGAGGAAG
Seq C2 exon
GAGCTCGCAGAGCTGGAAAATGCCCTCCAGGAGCAGCATGAGGTGAACGCATCCCTGCAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGCTGAAACTAAAGGATGCTGAAACCAGCCAGCTCAAGCAGGAGTTAGAAAACCTCGTAAGGCGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'20-29,'20-27,21-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.304 C2=0.585
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(34.3=67.3)
A:
PF138511=GAS=PD(64.7=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATATGAAAGCCCAGAAGAGG
R:
GCTTGAGCTGGCTGGTTTCAG
Band lengths:
298-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]